PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP038952.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 355aa    MW: 40692.7 Da    PI: 6.9329
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP038952.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.86.8e-192262872486
     trihelix  24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  g  k+  Wee+s km e g+ rs  +C+ekwen+nk+++++   ++kr s + + cpyf++le
  PCP038952.1 226 GTPKGRIWEEISVKMGEMGYVRSGRKCREKWENINKYFRRCMGPDSKR-SANAKLCPYFHELE 287
                  5689999***************************************98.67778*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MAELTGGRHL PNSDAFGEQI SPFPESTYDL VFENPTPAVP SPPQKLRPVR GGGGRSPMDS  60
GGKLEDVGPA KVGSGDELED ESSSSADDDD DRDKCLKAQG EEPMKRKRKT NVRTGNRLEI  120
ERVELFLESL VKKVMEQQEQ MHKQLIEVIE KNEKERLARE EAWKQQVLDR LKRDKEIRAQ  180
ETSRSLALIS FIQNYLGSEN QYLIMIFNGW KEMGRQTMAC RRPDVGTPKG RIWEEISVKM  240
GEMGYVRSGR KCREKWENIN KYFRRCMGPD SKRSANAKLC PYFHELELLH KSGLVSFGNG  300
FNRTSNQNEA KIEKEEQKSE KRSDDGIQTS PAFDNGDASE GKFQRERERE RDELR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.19e-36Trihelix family protein