PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP038616.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-YC

Protein Properties

Length: 262aa MW: 29361.1 Da PI: 6.1096

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP038616.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	176.7	2.3e-55	81	184	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ql++fw++q i+k+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdi PCP038616.1 81 QLQTFWTNQyqeIDKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDI 178 89****998999******************************************************************************** PP NF-YC 96 vprdel 101 vpr++l PCP038616.1 179 VPREDL 184 *987 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MDPQGHHQPQ SMGMVGSGAQ LTYGSNPYQH NQMVGSPNPG SVAATVGAMQ SASQSPGAQL 60 AQHQLAYQHI HQQQQQQLQQ QLQTFWTNQY QEIDKVTDFK NHSLPLARIK KIMKADEDVR 120 MISAEAPVIF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP 180 REDLKDEVLA SIPRGTVSVG GPDDALPYCY MPPQHAPQVG DPGMIMGKPM MDPSMYAQQS 240 HPYMTQPMWQ QAPDQQQSPS DH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	160	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	7e-86	NF-YC family protein