PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP038451.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 713aa MW: 79656 Da PI: 6.6637

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP038451.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.3	1.2e-24	86	168	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rre++ ++++k++ +lW+++s++mre+gf rsp++C++kw+nl k++kk +++ k + +s +++y+++l+ PCP038451.1 86 WVQEETRSLIGFRREVDGLFNTSKSNRHLWDQISARMREKGFDRSPTMCTDKWRNLLKEFKKARHQVKVG--ARSAKMSYYEDLQ 168 *****************************************************************997..56678***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence
MYHSEKPRAV DLYKGGGLEE TETEMMMEVA AVNGRAPPHH QNQNEREQQQ SSGGEGEEQE 60 LCAAVSSRAG GGPGGAAGPK KRAETWVQEE TRSLIGFRRE VDGLFNTSKS NRHLWDQISA 120 RMREKGFDRS PTMCTDKWRN LLKEFKKARH QVKVGARSAK MSYYEDLQDL LRDRTSNSNS 180 ATANSNHNSV SAAAAAVATP PKLDSFVRFS DKGLEDSTIP FGPMEANDRS ALNLERQLDH 240 DSGDPLAITA ADAVAVNGVP PWNWREGPEN GGEDHSSYCG RIITVKLGEY TRRIGIDGTG 300 EAIKEAIKSA FRIRTKRAFW LEDEDQVVRS LDRDMPLGNY TLHLDEGITI KLCLYDDSDR 360 IVRTEEITLY TEDDFRDFLA RRGLMGLREL SGYRRVDTLD DLHSGAMYQG LCVALLCHLN 420 ESFVPVKYFF DCLPVIRVKE NRFFPVSKTP KHEFLICFRK GETALHSLIV TASVFKWLLQ 480 IGRLVARVAL QRDDIELVVV NDPFINIEYM VIHDKFGIVE GLMTTVHSIL XXXXXXXXXX 540 XXXXXXNRSF AADWFSQRNA ATQKTVDGPS TKDWRGGRAA GTNIIPSSTG AAKAVGKVLP 600 ALNGKLTGMA FRVPTVDVSV VDLTVRLEKK ATYDEIKNAI KKESEGSMKG ILGYTDEDVV 660 STDFVGDHRS SIFDAKAGIA LNDNFVKLVS WYDNEWGYSS RVIDLIRHIA SVK

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence

MYHSEKPRAV DLYKGGGLEE TETEMMMEVA AVNGRAPPHH QNQNEREQQQ SSGGEGEEQE  60
LCAAVSSRAG GGPGGAAGPK KRAETWVQEE TRSLIGFRRE VDGLFNTSKS NRHLWDQISA  120
RMREKGFDRS PTMCTDKWRN LLKEFKKARH QVKVGARSAK MSYYEDLQDL LRDRTSNSNS  180
ATANSNHNSV SAAAAAVATP PKLDSFVRFS DKGLEDSTIP FGPMEANDRS ALNLERQLDH  240
DSGDPLAITA ADAVAVNGVP PWNWREGPEN GGEDHSSYCG RIITVKLGEY TRRIGIDGTG  300
EAIKEAIKSA FRIRTKRAFW LEDEDQVVRS LDRDMPLGNY TLHLDEGITI KLCLYDDSDR  360
IVRTEEITLY TEDDFRDFLA RRGLMGLREL SGYRRVDTLD DLHSGAMYQG LCVALLCHLN  420
ESFVPVKYFF DCLPVIRVKE NRFFPVSKTP KHEFLICFRK GETALHSLIV TASVFKWLLQ  480
IGRLVARVAL QRDDIELVVV NDPFINIEYM VIHDKFGIVE GLMTTVHSIL XXXXXXXXXX  540
XXXXXXNRSF AADWFSQRNA ATQKTVDGPS TKDWRGGRAA GTNIIPSSTG AAKAVGKVLP  600
ALNGKLTGMA FRVPTVDVSV VDLTVRLEKK ATYDEIKNAI KKESEGSMKG ILGYTDEDVV  660
STDFVGDHRS SIFDAKAGIA LNDNFVKLVS WYDNEWGYSS RVIDLIRHIA SVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-137	Trihelix family protein