PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP038154.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 803aa MW: 87338.1 Da PI: 6.5378

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP038154.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	185	5.2e-57	432	650	2	222
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+ +++ + ++ pp++ ++ ++ ++ a+k+fsevsP+l+f ++t+N PCP038154.1 432 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLMNN--PATF--PPPRTRTPFDVFFKMGAYKVFSEVSPLLQFVNFTCN 525 679************************************************9..4444..5888888889********************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLa..sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..elee 193 qa+lea++ ++++Hi+Dfdi+ G++W++++q+L +R ++pslRiT+++sp++++ el ++++L++fA+e+g++fe +v+ + l++ +l PCP038154.1 526 QALLEALSDADQIHIVDFDIGFGAHWASFMQELPtwNRGVSAPSLRITAFASPSTHHPIELGLMRDNLTQFANEIGISFELDVVNLDYLDQNsySLPI 623 *****************************94456688**************************************977755554125566 PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsles 222 ++++ gEa++Vn+ + ++ +++++l++ PCP038154.1 624 IQTNDGEAVVVNFPI--WSTSNQPAALPN 650 78888*****998..444445555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 803 aa Download sequence
MPFQFQQGKA VVEITTASLP AIFTDSSCSK YKDGGFFNHH HHSFPTGEPN SVLHMRRSPS 60 PPTSASTLSA SFNKGGGGGD KSTSLAAETL PAVGPASSKD EWACELQSIR SGGLEAVTGS 120 GGGVERCGLG LGGLEDWETM LSETAASPAH DQSLLRWIAG DVDDMSCGLK QLLQSGNGNH 180 HNSPIDFDGN AGLGIVDQGP NFDLIGSSGV SVPNFGFAGS GFSNGGNNGS NGKVGFVPPR 240 SGSFGLLNYK VSNVGLMHNN GGTNSVNCNI QNPIFSNSSN TVALPVSLPA VYGQQQFESS 300 PDEKPQILNP QLFMNNQTQQ PQNPNFFMPL AYAQQEQYHL LESQPKRHNS GSNVNLSTHQ 360 IQKGQFSDPR HDIFVRHQQQ QQLGFAQGMQ FLPQQHHIQQ KPLMVPKQTV VLGNGEEMTH 420 HQQQQQLQDT LLDQLYKAAE LVGTGNFSHA QGILARLNHQ LSPVGKPLQR AAFYFKEALQ 480 LLMNNPATFP PPRTRTPFDV FFKMGAYKVF SEVSPLLQFV NFTCNQALLE ALSDADQIHI 540 VDFDIGFGAH WASFMQELPT WNRGVSAPSL RITAFASPST HHPIELGLMR DNLTQFANEI 600 GISFELDVVN LDYLDQNSYS LPIIQTNDGE AVVVNFPIWS TSNQPAALPN VLRFLGIQQG 660 DSMLRSVKSH LFYAGSIESS SPLQLGGAEE QHFDKRGRWA STLGRTNHLT DKPSRVLFIL 720 DMNIAAMNKL KGNVPPSISN CVNLEVIDLS QNGLTGSIPR GLFNLQNLTK LLLLSNNFSI 780 EILPKIRNCS SLIQFQASGD KLA

Sequence ? help Back to Top

Protein Sequence Length: 803 aa Download sequence

MPFQFQQGKA VVEITTASLP AIFTDSSCSK YKDGGFFNHH HHSFPTGEPN SVLHMRRSPS  60
PPTSASTLSA SFNKGGGGGD KSTSLAAETL PAVGPASSKD EWACELQSIR SGGLEAVTGS  120
GGGVERCGLG LGGLEDWETM LSETAASPAH DQSLLRWIAG DVDDMSCGLK QLLQSGNGNH  180
HNSPIDFDGN AGLGIVDQGP NFDLIGSSGV SVPNFGFAGS GFSNGGNNGS NGKVGFVPPR  240
SGSFGLLNYK VSNVGLMHNN GGTNSVNCNI QNPIFSNSSN TVALPVSLPA VYGQQQFESS  300
PDEKPQILNP QLFMNNQTQQ PQNPNFFMPL AYAQQEQYHL LESQPKRHNS GSNVNLSTHQ  360
IQKGQFSDPR HDIFVRHQQQ QQLGFAQGMQ FLPQQHHIQQ KPLMVPKQTV VLGNGEEMTH  420
HQQQQQLQDT LLDQLYKAAE LVGTGNFSHA QGILARLNHQ LSPVGKPLQR AAFYFKEALQ  480
LLMNNPATFP PPRTRTPFDV FFKMGAYKVF SEVSPLLQFV NFTCNQALLE ALSDADQIHI  540
VDFDIGFGAH WASFMQELPT WNRGVSAPSL RITAFASPST HHPIELGLMR DNLTQFANEI  600
GISFELDVVN LDYLDQNSYS LPIIQTNDGE AVVVNFPIWS TSNQPAALPN VLRFLGIQQG  660
DSMLRSVKSH LFYAGSIESS SPLQLGGAEE QHFDKRGRWA STLGRTNHLT DKPSRVLFIL  720
DMNIAAMNKL KGNVPPSISN CVNLEVIDLS QNGLTGSIPR GLFNLQNLTK LLLLSNNFSI  780
EILPKIRNCS SLIQFQASGD KLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	2e-52	GRAS family protein