PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP036604.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 893aa MW: 98629.2 Da PI: 7.4984

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP036604.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69	9e-22	801	881	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev++Li++r ++++r++ k +++lWee+s+++ + g++rsp qCk+ w +l ++y++ k g+++r +++pyfd+++ PCP036604.1 801 KWKTDEVQKLITMRGKLHSRFQVVKGRMALWEEISRNLLADGINRSPGQCKSLWASLVQKYEESKSGKRSR-----KSWPYFDEMD 881 7******************************************************************96.....56*****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 893 aa Download sequence
MAALGALSPC PYSLLWRPKT SNRCVSCSVG SSTATGTRRS NVRRSGRMEG PRKSMEDSVQ 60 RKMEQFYEGR EGPPIRVLPI GGLGEIGMNC MLVGNYDRYI LIDAGVMFPD FDELGVQKII 120 PDTTFIKKWS HKIEAIVITH GHEDHIGALP WVIPALDPNT PIFASSFTME LIKKRLKEHG 180 IFVPSRLRTF RTKRKFTAGP FEIEPVRVTH SIPDCCGLVL RCSDGTILHT GDWKIDESPL 240 DGRGFDREAL EELSKEGVTL MMSDSTNVLS PGRTTSESSV ADALLKHISA AKGRVITTQF 300 ASNIHRLGSV KAAADFTGRK LVFVGMSLRT YLDAAWKDGK APIDPSSLVK VEDIDSYAPK 360 DLLIVTTGSQ AEPRAALNLA SFGSSHSVKL NKEDIILYSA KVIPGNESRV MKMLNRISDL 420 GSTIVMGKNE GLHTSGHGYR GELEEVLQIV KPQHFLPIHG ELLFLKEHEL LGRSTGIHHT 480 TVIKNGEMLG VSHLRNRRVL SNGFTLLGKE NLQLKFSDGD KAFGTSSDLC VDERLRIALD 540 GIIVVSMEIL RPQNVNGSTE NSIKGKIKIT TRCLWLDKGK LIDALYKAAH AALSSCPISC 600 PLPHMERTVS EILRKLVRKY SGKRPDIIAI AMENPAAVHA DEVSARLSGK SYVGSEVSQL 660 RKVYDQHQIK SPSTRTQADD GKANTHFPSQ STTTQADEGK DNTLQSISQQ DTEESVLEDD 720 GIEVEGLLPE EDSATSSSKP EKLSSDSEDS EDFWNAMVRL STGDKSVEDE NGLVAEQENP 780 QKDGPESSEI PNLSKPVKRN KWKTDEVQKL ITMRGKLHSR FQVVKGRMAL WEEISRNLLA 840 DGINRSPGQC KSLWASLVQK YEESKSGKRS RKSWPYFDEM DGALSDSEEL ATK

Sequence ? help Back to Top

Protein Sequence Length: 893 aa Download sequence

MAALGALSPC PYSLLWRPKT SNRCVSCSVG SSTATGTRRS NVRRSGRMEG PRKSMEDSVQ  60
RKMEQFYEGR EGPPIRVLPI GGLGEIGMNC MLVGNYDRYI LIDAGVMFPD FDELGVQKII  120
PDTTFIKKWS HKIEAIVITH GHEDHIGALP WVIPALDPNT PIFASSFTME LIKKRLKEHG  180
IFVPSRLRTF RTKRKFTAGP FEIEPVRVTH SIPDCCGLVL RCSDGTILHT GDWKIDESPL  240
DGRGFDREAL EELSKEGVTL MMSDSTNVLS PGRTTSESSV ADALLKHISA AKGRVITTQF  300
ASNIHRLGSV KAAADFTGRK LVFVGMSLRT YLDAAWKDGK APIDPSSLVK VEDIDSYAPK  360
DLLIVTTGSQ AEPRAALNLA SFGSSHSVKL NKEDIILYSA KVIPGNESRV MKMLNRISDL  420
GSTIVMGKNE GLHTSGHGYR GELEEVLQIV KPQHFLPIHG ELLFLKEHEL LGRSTGIHHT  480
TVIKNGEMLG VSHLRNRRVL SNGFTLLGKE NLQLKFSDGD KAFGTSSDLC VDERLRIALD  540
GIIVVSMEIL RPQNVNGSTE NSIKGKIKIT TRCLWLDKGK LIDALYKAAH AALSSCPISC  600
PLPHMERTVS EILRKLVRKY SGKRPDIIAI AMENPAAVHA DEVSARLSGK SYVGSEVSQL  660
RKVYDQHQIK SPSTRTQADD GKANTHFPSQ STTTQADEGK DNTLQSISQQ DTEESVLEDD  720
GIEVEGLLPE EDSATSSSKP EKLSSDSEDS EDFWNAMVRL STGDKSVEDE NGLVAEQENP  780
QKDGPESSEI PNLSKPVKRN KWKTDEVQKL ITMRGKLHSR FQVVKGRMAL WEEISRNLLA  840
DGINRSPGQC KSLWASLVQK YEESKSGKRS RKSWPYFDEM DGALSDSEEL ATK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein