PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP035343.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 994aa MW: 111739 Da PI: 4.9107

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP035343.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.8	2.9e-28	69	118	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien++nrqvt+skRrng++KKA+EL vLCdaev++i++ss+gk++ey+s PCP035343.1 69 RIENSTNRQVTYSKRRNGLFKKANELTVLCDAEVSLIMVSSSGKVHEYIS 118 8***********************************************86 PP
2	K-box	78.2	2e-26	131	225	2	96
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 k+ g + +++++e +q++l+kLk+ + nL+r++R+++G++L++Ls+ eL+ L++++e ++ iR++K +++ ++i++++kk k++ ++n++L++ PCP035343.1 131 RKTLGIDIWSSHYEAMQEHLKKLKEVNMNLRRQIRQRVGDCLNDLSFDELRGLQEEVEAAVAVIRQRKVRMISNKIDTTKKKVKSQADINMSLHE 225 56677889***********************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 994 aa Download sequence
MLHQNGNRDL VKNGKRTYDA PSPSMGPHTS KSDPILTRNP FYFXSDLKRE REEERREREM 60 ARGKIQIRRI ENSTNRQVTY SKRRNGLFKK ANELTVLCDA EVSLIMVSSS GKVHEYISPS 120 TTTKQLLDQY RKTLGIDIWS SHYEAMQEHL KKLKEVNMNL RRQIRQRVGD CLNDLSFDEL 180 RGLQEEVEAA VAVIRQRKVR MISNKIDTTK KKVKSQADIN MSLHELDGAS LESLAKGAVH 240 FSRRFTVREL QDRWYSLLYD PVVSEDASAR MIEFESSTTT VPFDRSGNSK EKKCESGKRK 300 AESVRSSYYA MRKRICNEPF NSMGLNFLVA PSNNNYHGNG DEPLYGNCMN GDPTSAPFGL 360 ETSDVDAMQN LMNVGIDDTF HTLQNPDGND FHMEQGNIHE DIMTWNESEV DEFNHPEGLP 420 DCSLFNADDL GMKFTLDQIN GNEGNMCTEF EGNKAFNSPV SDSGALFNNL EYSCPLPAMP 480 VDVDLRENNM CTSDAFELHE NIDADSARTS ETEVHIRIEV DAEMPCGDFQ RSAAPVSTEG 540 YLAELSNSLL NFTNEELMLM TADGKDVIDK SYYDGLSSLL LRSPKDGVHQ EQTIVKSEPE 600 TSVAPVMDPM NPPSTYPGVV DDNRGSPNAD EDMVCHSETP MLSSSTASNY QNPELKDGVI 660 CCPLNTEDPE IPRNDDIFLP NRPSTSEVNK PLSLSTRGFP VNKRNNDTGS CFMHRERKNL 720 GEPHSTSQIK GSHFLQEKGL KPPLGNFGVK FELSKTDASE VASKNAGHVS EVLGQIYSAN 780 PSTSVQPGIL KKDTREKSIS AKLLNYNSTE FHVEKPDSGV IKQELDPSAT IRDNKSLHTE 840 GIAEAQLNPE TSDQLGLFES DDDVPCYSDI EAMVLDMDLD PYDQELYSSE EVSKYQNEDA 900 KRRIIRLEQC AYSYLQRATA SHGAFAILYG RNSKHYIKKP EVLLGRATDD TVVDIDLGSE 960 GRGNKISRKQ IRGMPFIFEM NQTRMKQYLD SIPQ

Sequence ? help Back to Top

Protein Sequence Length: 994 aa Download sequence

MLHQNGNRDL VKNGKRTYDA PSPSMGPHTS KSDPILTRNP FYFXSDLKRE REEERREREM  60
ARGKIQIRRI ENSTNRQVTY SKRRNGLFKK ANELTVLCDA EVSLIMVSSS GKVHEYISPS  120
TTTKQLLDQY RKTLGIDIWS SHYEAMQEHL KKLKEVNMNL RRQIRQRVGD CLNDLSFDEL  180
RGLQEEVEAA VAVIRQRKVR MISNKIDTTK KKVKSQADIN MSLHELDGAS LESLAKGAVH  240
FSRRFTVREL QDRWYSLLYD PVVSEDASAR MIEFESSTTT VPFDRSGNSK EKKCESGKRK  300
AESVRSSYYA MRKRICNEPF NSMGLNFLVA PSNNNYHGNG DEPLYGNCMN GDPTSAPFGL  360
ETSDVDAMQN LMNVGIDDTF HTLQNPDGND FHMEQGNIHE DIMTWNESEV DEFNHPEGLP  420
DCSLFNADDL GMKFTLDQIN GNEGNMCTEF EGNKAFNSPV SDSGALFNNL EYSCPLPAMP  480
VDVDLRENNM CTSDAFELHE NIDADSARTS ETEVHIRIEV DAEMPCGDFQ RSAAPVSTEG  540
YLAELSNSLL NFTNEELMLM TADGKDVIDK SYYDGLSSLL LRSPKDGVHQ EQTIVKSEPE  600
TSVAPVMDPM NPPSTYPGVV DDNRGSPNAD EDMVCHSETP MLSSSTASNY QNPELKDGVI  660
CCPLNTEDPE IPRNDDIFLP NRPSTSEVNK PLSLSTRGFP VNKRNNDTGS CFMHRERKNL  720
GEPHSTSQIK GSHFLQEKGL KPPLGNFGVK FELSKTDASE VASKNAGHVS EVLGQIYSAN  780
PSTSVQPGIL KKDTREKSIS AKLLNYNSTE FHVEKPDSGV IKQELDPSAT IRDNKSLHTE  840
GIAEAQLNPE TSDQLGLFES DDDVPCYSDI EAMVLDMDLD PYDQELYSSE EVSKYQNEDA  900
KRRIIRLEQC AYSYLQRATA SHGAFAILYG RNSKHYIKKP EVLLGRATDD TVVDIDLGSE  960
GRGNKISRKQ IRGMPFIFEM NQTRMKQYLD SIPQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	1e-65	MIKC_MADS family protein