PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP035113.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 462aa MW: 50278.3 Da PI: 8.2633 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.4 | 9e-12 | 76 | 102 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H++ PCP035113.1 76 PGEPDCIYYLRTGLCGYGSNCRFNHPK 102 5789*********************96 PP | |||||||
2 | zf-CCCH | 38.5 | 2e-12 | 120 | 144 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++CkF+H++ PCP035113.1 120 QPDCGYFLKTGTCKYGSTCKFHHPR 144 789********************96 PP | |||||||
3 | zf-CCCH | 38 | 2.7e-12 | 167 | 189 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G+ CkF+H++ PCP035113.1 167 SCPYYMRTGSCKFGPACKFHHPQ 189 6********************97 PP | |||||||
4 | zf-CCCH | 36.1 | 1.1e-11 | 305 | 330 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG Ck++H++ PCP035113.1 305 DQPECRYFMSTGTCKYGIDCKYHHPK 330 689*********************96 PP | |||||||
5 | zf-CCCH | 35.4 | 1.8e-11 | 347 | 373 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++ +G+CkyG++C+F H++ PCP035113.1 347 PGQPVCSYYLMYGICKYGPTCRFDHPF 373 5789*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence |
MTLVGEAEKK SRGKQHKGQV HANSVLPPMP DARQAQKNAV PSQSDGNVEE AFWRLTINDN 60 QERGGVAQAN SYPDRPGEPD CIYYLRTGLC GYGSNCRFNH PKYASQGNQY NGELPERVGQ 120 PDCGYFLKTG TCKYGSTCKF HHPRDRRGAG PVLFNVLGLP MHQEEKSCPY YMRTGSCKFG 180 PACKFHHPQP QSLGTVLPAF GSAGSTVVPS SGVPYVGGLS TWSIPRVPYI SGPRLQTPQS 240 YMPVVLPPQG IVPAHGWNTY VGNLSPVSST GILGSNLTYN SSTWGESASN GQVHLSSPSL 300 PQRPDQPECR YFMSTGTCKY GIDCKYHHPK ERIAESATTP LGLPSRPGQP VCSYYLMYGI 360 CKYGPTCRFD HPFMEQSASY NFGMQALPML DSSLISYPRG WSVAHGLETS PSIPSKLTDG 420 AKKPASNRYE NSDTKISEDS PEQVGSMSPS PTSSEPVQDQ SG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-110 | C3H family protein |