PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP035025.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 308aa    MW: 32911.4 Da    PI: 4.7
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP035025.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002282305123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C+ C+ksF++   L +H +  H
  PCP035025.1 282 HSCKTCSKSFNSDGALSSHNKAkH 305
                  79*****************88766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MISMSVSGLR CYAINYCCTL NNDSVFVGLG VEVKAGEPLK VVPAESYVIH LSQATLGELK  60
KGGDQCVIHV KVGDQKLVLA NLSSDKMPQI PFDLLSFVEM HAKHAAVLSI AFGDQNSDVV  120
TIFLVDFDSE SEEDLPLNFT GNGNIVEAKP APPKTKAVKP ESSGKQKVKI EEPIKDEDDS  180
DDSDEDDSDD DDESSDEDML GADSSDEDDE DSEKEEDTPT PKKDSKKRPN ESAPKTPVSA  240
KKAKQVTPQK TDGKKGAHTA TPHPAKKGGK TPQTPNSAGG DHSCKTCSKS FNSDGALSSH  300
NKAKHGAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.23e-18C2H2 family protein