PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP034819.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 564aa MW: 62439.6 Da PI: 4.9885

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP034819.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.2	9e-11	421	445	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++r+G CkyG++Ck++H++ PCP034819.1 421 QTECKYYLRSGGCKYGEKCKYSHSK 445 568********************95 PP
2	zf-CCCH	29.8	1e-09	460	484	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + ++Cr++ r+G Cky ++C+F+H+ PCP034819.1 460 GKRECRYYIRNGSCKYASNCRFNHP 484 789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence
MLSALRFLLP VSVSVLVAIY NYYKSRQKFS EGVEVPLNPT SGPSPATSDL DHEILDWIRT 60 LDPAVLNRIR NPDPALLHEI HQFNPAVEIR NFDPSIVDRI RNLDPAFPSD FSESVDVPQN 120 PPSVPSPEPS VVEILDWIGT LGPAVLDEIQ QFDPAFLDED RSFDPSIVDG IPKLSLKKKE 180 EKAEEEEKER ETEREKENER ERESEKSESS SGGGGGNENG GEVEEEVVEE SSRRDQYPLR 240 LGDCRYHLRT GNCSPPLPDP SQGAVLRSIS SSSFFLEFPQ FSTRRLGFGD VRRAARFGCW 300 VLHGDGEGEG WVRQTFSRFP DGRRRGGRNP SEGGGNPSGE NKKLMLTSSR PGIGSADFCW 360 AACWPPPEPS GFFGMDRVFG EGGEKMGCCP AKRGRAGVAL SICVPKESVK DKDESAQNPS 420 QTECKYYLRS GGCKYGEKCK YSHSKVKLEL NFLGLPIRPG KRECRYYIRN GSCKYASNCR 480 FNHPDPTDTG ESDPSSGYGN GGPAFLQGAS QSTVAPWSAP RPLNEDPVYS TLMIPPPQVV 540 SSQNSEWNGY QVLLFNFPIS ESRV

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence

MLSALRFLLP VSVSVLVAIY NYYKSRQKFS EGVEVPLNPT SGPSPATSDL DHEILDWIRT  60
LDPAVLNRIR NPDPALLHEI HQFNPAVEIR NFDPSIVDRI RNLDPAFPSD FSESVDVPQN  120
PPSVPSPEPS VVEILDWIGT LGPAVLDEIQ QFDPAFLDED RSFDPSIVDG IPKLSLKKKE  180
EKAEEEEKER ETEREKENER ERESEKSESS SGGGGGNENG GEVEEEVVEE SSRRDQYPLR  240
LGDCRYHLRT GNCSPPLPDP SQGAVLRSIS SSSFFLEFPQ FSTRRLGFGD VRRAARFGCW  300
VLHGDGEGEG WVRQTFSRFP DGRRRGGRNP SEGGGNPSGE NKKLMLTSSR PGIGSADFCW  360
AACWPPPEPS GFFGMDRVFG EGGEKMGCCP AKRGRAGVAL SICVPKESVK DKDESAQNPS  420
QTECKYYLRS GGCKYGEKCK YSHSKVKLEL NFLGLPIRPG KRECRYYIRN GSCKYASNCR  480
FNHPDPTDTG ESDPSSGYGN GGPAFLQGAS QSTVAPWSAP RPLNEDPVYS TLMIPPPQVV  540
SSQNSEWNGY QVLLFNFPIS ESRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	4e-38	C3H family protein