PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP034714.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 127aa MW: 14151.1 Da PI: 10.482 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.9 | 1.5e-24 | 80 | 123 | 8 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKA ELS+LC+ evaviifs+tgkl+++ss PCP034714.1 80 ARQVTFSKRRRGIFKKAGELSILCESEVAVIIFSQTGKLFDFSS 123 59****************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence |
MDSSERSSLR EIGEGLTDRE XDLSFLEQPA APTLSLSPQS SPLSKIAPKI SSSDLKPLNE 60 GGRKKEKMKI KIRKIDYLPA RQVTFSKRRR GIFKKAGELS ILCESEVAVI IFSQTGKLFD 120 FSSSRTL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 4e-23 | MIKC_MADS family protein |