PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP034404.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 663aa MW: 72782 Da PI: 7.4641

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP034404.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.9e-07	267	287	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg PCP034404.1 267 PCPEFRK-GSCQKGDACEYAHG 287 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 663 aa Download sequence
MCKGSKDKLS PSNFIMESEF QKQKSVLVEL SASDNLDAFR TEVEEMGFHV DEAGFWYGRR 60 IGSKQMGFEE RTPLMIAAMF GSTKVLKYII ESGMVDVNRS CGSDRVTALH CAAAGGSTAS 120 LEVVKLLLDA SADANFVNAY GNMPVDVIAP ALKSPCSSRR KAMEMLLRGD KSVMESDQIA 180 IEEGDQQKVS SPQMPKEGSD KKEYPIDISL PDINNGIYGT DEFRMFTFKV KPCSRAYSHD 240 WTECPFVHPG ENARRRDPKK YPYSCVPCPE FRKGSCQKGD ACEYAHGVFE SWLHPAQYRT 300 RLCKDETGCT RKVCFFAHRP EELRPVYAST GSAMPSPRSM SVSAADMATL SPLALGSSAM 360 SMPITSTPPM SPLAAASSPK NGGLWQNKVN LTPPTLQLPG SRLKSACSAR DLELEMELLG 420 LDSHSSQHQQ LWDEISRLSS SPSFSRLGEL KPTNLEDAFG SVDPSLLSQL QGHSQKPSAP 480 THRQNMNQLR SSYPTNLSSS PVRKPSSFGL DSPSALAAAV MNSRSAAFAQ QRSQSFIDRG 540 AMNHLSGLNA PVNSSTMRQS SDWGSPGGKL DWGMQGDELN KLKKSASFGF RSNNAGTPPG 600 FKPSTVDEPD VSWVNSLVKD VSSERSELYG ADNKQRYRRL NNGAHEMLPS WAEQMYIEQE 660 QRA

Sequence ? help Back to Top

Protein Sequence Length: 663 aa Download sequence

MCKGSKDKLS PSNFIMESEF QKQKSVLVEL SASDNLDAFR TEVEEMGFHV DEAGFWYGRR  60
IGSKQMGFEE RTPLMIAAMF GSTKVLKYII ESGMVDVNRS CGSDRVTALH CAAAGGSTAS  120
LEVVKLLLDA SADANFVNAY GNMPVDVIAP ALKSPCSSRR KAMEMLLRGD KSVMESDQIA  180
IEEGDQQKVS SPQMPKEGSD KKEYPIDISL PDINNGIYGT DEFRMFTFKV KPCSRAYSHD  240
WTECPFVHPG ENARRRDPKK YPYSCVPCPE FRKGSCQKGD ACEYAHGVFE SWLHPAQYRT  300
RLCKDETGCT RKVCFFAHRP EELRPVYAST GSAMPSPRSM SVSAADMATL SPLALGSSAM  360
SMPITSTPPM SPLAAASSPK NGGLWQNKVN LTPPTLQLPG SRLKSACSAR DLELEMELLG  420
LDSHSSQHQQ LWDEISRLSS SPSFSRLGEL KPTNLEDAFG SVDPSLLSQL QGHSQKPSAP  480
THRQNMNQLR SSYPTNLSSS PVRKPSSFGL DSPSALAAAV MNSRSAAFAQ QRSQSFIDRG  540
AMNHLSGLNA PVNSSTMRQS SDWGSPGGKL DWGMQGDELN KLKKSASFGF RSNNAGTPPG  600
FKPSTVDEPD VSWVNSLVKD VSSERSELYG ADNKQRYRRL NNGAHEMLPS WAEQMYIEQE  660
QRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein