PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP032840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 562aa MW: 60998.2 Da PI: 7.5716 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.8 | 5.9e-11 | 45 | 71 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG+rC+++H++ PCP032840.1 45 PGVPNCVYYMRTGFCGYGGRCRYSHPR 71 5789*********************96 PP | |||||||
2 | zf-CCCH | 39.8 | 7.6e-13 | 92 | 116 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++++tGtCk+G++CkF+H++ PCP032840.1 92 EPVCQYYLKTGTCKFGASCKFHHPK 116 789********************96 PP | |||||||
3 | zf-CCCH | 33.5 | 7.2e-11 | 137 | 161 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C+++++tG+Ck+G +CkF+H+ PCP032840.1 137 GENECSYYLKTGQCKFGITCKFHHP 161 6789********************8 PP | |||||||
4 | zf-CCCH | 35 | 2.4e-11 | 295 | 318 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++++tG CkyG++C+++H++ PCP032840.1 295 LECQYYLKTGDCKYGPSCRYHHPR 318 58********************96 PP | |||||||
5 | zf-CCCH | 39 | 1.3e-12 | 338 | 364 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Crf++++G+Ck+G++CkF H++ PCP032840.1 338 PGEPPCRFYLQNGQCKFGSTCKFDHPM 364 5899*********************95 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 562 aa Download sequence |
MELYGRSPAR NGSNQEWSPA AGETGLEEQM WQLGLTSSES YPERPGVPNC VYYMRTGFCG 60 YGGRCRYSHP RDRAAVVATV RATGDYPERV GEPVCQYYLK TGTCKFGASC KFHHPKHGAG 120 SLNRAPLNIY GYPLRPGENE CSYYLKTGQC KFGITCKFHH PHPAGTTIPA SAPQFYPSVQ 180 SPVPLAEQYG GASTSLRVAR PPLLTGSYVQ GTYGPVLIPP GVVPIQGWSP YSAPLSPVPS 240 PGAQPTVGAT SLYGVTQLSS PTHGLASPYT SIPSSVGPSS SNPSEQVFPE RPGELECQYY 300 LKTGDCKYGP SCRYHHPRDR TVPGITCLLS PMGLPLRPGE PPCRFYLQNG QCKFGSTCKF 360 DHPMQTMRYN LSASSLVDMP VVQYPVGSLL ATLAPSSSSS NLRPDLLSSS GNTSSSSGGL 420 IFSQSGSVSL SDVQLSMITN VSLKVNFFSV RLTIGALFNI ARGIIERLGT LAFQEIGLIW 480 GVKDEVRKLK EIVAGFQAIL LDAEQKQASN NEVEVWLESI EDAVYEADGV LDEFNTEAQR 540 FFFYFIDGKY VVPIAFLSVF LV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-175 | C3H family protein |