PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP032816.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 767aa MW: 81066.1 Da PI: 7.2236

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP032816.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.6e-06	739	759	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr f+++G+Ck G+ C + H+ PCP032816.1 739 VCR-FFESGHCKKGAACDYLHP 759 588.9999*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence
MTRNGYAVIL NFLFTLRECV EKLQLLKTPE ERQRRLEETP EIHADPNMDP SYESEEEEDE 60 GDDKRQDSYT RSTGSAFGRK GRDPISPRRG GSSFNDSWSG TRNYSNPNRE LSRNMSNKGF 120 YNKAENTTGA GEIVNDSWGQ GRDRETLKTN QWEKKQNISS LETGVRSTQS MVPSESSPGG 180 GSGNSVAHFS TGISQSTATI NDAEKIWHYK DPSGKVQGPF SMAQLRKWNS TGYFPANLRV 240 WKNTEKEEDS ILVTDVLAGK FQKDPSPVDS SFLKAQMVQD SHLTPAHSGK PQGGLFQRGT 300 EGQAGGGSWG SQNELNPSSG RGTPSSVEVP KYSSDGWSTT DFPSPTPSRT PLGGARGQAY 360 ESNWSPTPVH PTGSILGGNG VPQPSTVATP ESALRVSLSG NDRSSSLHGI NAAPKSEGGP 420 LLGSTNSLQM QSQVNASMNQ VPDVKNLVSN LQNLVQSVTS RSPGGDTQGW ASGSVPKQEM 480 TGSGPVSGSE TQHWTGAPSQ RIEPISATTM PAQHPAHGYW SNAPSTNNAT PSINTGNAAG 540 NFPSSGFSGV PQSDPWRPQV PANQSYIQPP ALSPQLHWSM GVPDNQSSLP RTGQENQNAG 600 WAPIGEDPNM AWGGQVPANT NMNWGAPGQG PGWAGPGQGP VPGNAAPNWV QPAAQGPPAN 660 PGWAPSGQGT AVGNTNPGWS AQTQNGGDRF SNQRDRGPHG GDSGYGGGKP WNRQSSFGGG 720 GGGGGGGGGG GLWRTTSKVC RFFESGHCKK GAACDYLHPT SKNFGNT

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence

MTRNGYAVIL NFLFTLRECV EKLQLLKTPE ERQRRLEETP EIHADPNMDP SYESEEEEDE  60
GDDKRQDSYT RSTGSAFGRK GRDPISPRRG GSSFNDSWSG TRNYSNPNRE LSRNMSNKGF  120
YNKAENTTGA GEIVNDSWGQ GRDRETLKTN QWEKKQNISS LETGVRSTQS MVPSESSPGG  180
GSGNSVAHFS TGISQSTATI NDAEKIWHYK DPSGKVQGPF SMAQLRKWNS TGYFPANLRV  240
WKNTEKEEDS ILVTDVLAGK FQKDPSPVDS SFLKAQMVQD SHLTPAHSGK PQGGLFQRGT  300
EGQAGGGSWG SQNELNPSSG RGTPSSVEVP KYSSDGWSTT DFPSPTPSRT PLGGARGQAY  360
ESNWSPTPVH PTGSILGGNG VPQPSTVATP ESALRVSLSG NDRSSSLHGI NAAPKSEGGP  420
LLGSTNSLQM QSQVNASMNQ VPDVKNLVSN LQNLVQSVTS RSPGGDTQGW ASGSVPKQEM  480
TGSGPVSGSE TQHWTGAPSQ RIEPISATTM PAQHPAHGYW SNAPSTNNAT PSINTGNAAG  540
NFPSSGFSGV PQSDPWRPQV PANQSYIQPP ALSPQLHWSM GVPDNQSSLP RTGQENQNAG  600
WAPIGEDPNM AWGGQVPANT NMNWGAPGQG PGWAGPGQGP VPGNAAPNWV QPAAQGPPAN  660
PGWAPSGQGT AVGNTNPGWS AQTQNGGDRF SNQRDRGPHG GDSGYGGGKP WNRQSSFGGG  720
GGGGGGGGGG GLWRTTSKVC RFFESGHCKK GAACDYLHPT SKNFGNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	7e-80	C3H family protein