PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP032243.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 712aa    MW: 79488.6 Da    PI: 5.9915
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP032243.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.8e-192276256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +k +++t+eq+++Lee+F+ + +p+ ++r++L ++lgL+ +q+k+WFqN+R++ k
  PCP032243.1 22 KKYHRHTNEQIQRLEEFFKLCAHPDDSQRQQLGRELGLEPKQIKFWFQNKRTQTK 76
                 78999**********************************************9987 PP
2START1411.2e-442264482206
                  HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
        START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                  +a +a++elvk+ + +ep+Wvks       +n+  + ++f++++       ++e +++sgvv+  +a+lv  +ld++ +W e ++    ka+t+ev++
  PCP032243.1 226 IAASALEELVKLFQIDEPLWVKSTaygrYFLNRGNYDKIFPRTNQfktssARIESSKDSGVVTISAATLVDMFLDSN-KWEELFPtivtKAKTIEVLE 322
                  678899******************999988899999999988877899999**************************.******99999********* PP

                  TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
        START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                  sg      g l lm+ ++  lsplv  Rdf+f+Ry++q + g+wv+vdvS   +++    s+  R+ +lpSg+lie++ ng skvtw+ehv++++++ 
  PCP032243.1 323 SGmignrsGCLLLMYEQMHILSPLVLpRDFYFLRYCQQIKLGTWVVVDVSHKFPKES--FSNQSRSWRLPSGCLIEDMTNGCSKVTWIEHVEVDDKTQ 418
                  ************************966*********************888888876..578899999***************************999 PP

                  .HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 178 .hwllrslvksglaegaktwvatlqrqcek 206
                   h l+r l+ s++a ga +w  tl+r ce+
  PCP032243.1 419 tHRLYRDLICSSVAYGAERWIITLKRMCER 448
                  8***************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    
MELLGNGGAS SDEVSNSRRG NKKYHRHTNE QIQRLEEFFK LCAHPDDSQR QQLGRELGLE  60
PKQIKFWFQN KRTQTKAQSE RADNTILRQD NERIQCENYA MREALKNVSC PTCGGPPFGE  120
EERQINLQSL QLENAYLKEE ASIWNINKIS SHDKVASLLS KYIGKPLSQI ESLASVVGST  180
LDLSPGCSIN QGIIGSPPLD LNLTSPAFSY QLQEIPEMEK TLMADIAASA LEELVKLFQI  240
DEPLWVKSTA YGRYFLNRGN YDKIFPRTNQ FKTSSARIES SKDSGVVTIS AATLVDMFLD  300
SNKWEELFPT IVTKAKTIEV LESGMIGNRS GCLLLMYEQM HILSPLVLPR DFYFLRYCQQ  360
IKLGTWVVVD VSHKFPKESF SNQSRSWRLP SGCLIEDMTN GCSKVTWIEH VEVDDKTQTH  420
RLYRDLICSS VAYGAERWII TLKRMCERFD CLMDEVESTY FDEPIVRCLV VTSPEGKRSV  480
MKLSQRMVKN FCGMLSMAVK LDFPQLSEVN NSGVRVSVRK SAESGQPHGM IVSVATSLWL  540
PLPSETVFNF FRDEKSRVQW DVLSNGNPVH EIANISTGTH PGNCISVIRP FIPTENNMLM  600
LQESYTDPLG SLFVYAPVDV PALNVPVSGE DSSNIPILPS GFVISGDGRA EVTGDSGHST  660
AGGSLLTVAF QILVSSPSTS KQMNMESVAT VNTLISSTVQ KIKVALNCSS LD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein