PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP032242.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 688aa    MW: 77952.4 Da    PI: 7.0299
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP032242.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.21.1e-162778556
                 SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +++t eq+++Lee+F+++ +p+ ++re+L ++lgL+ +q+++WFqN+R++ k
  PCP032242.1 27 QRHTFEQIQRLEEFFRNCTHPDDDQREQLCRELGLDANQITFWFQNKRTQNK 78
                 567889******************************************9987 PP
2START130.12.7e-412174392206
                  HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
        START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                  +a +a++el+k+ + ++p+W+ks+      +n+d + + f++++       ++e +++sgvv   +a lv  +ld + +W   ++    ka t+ev++
  PCP032242.1 217 IAASAMEELIKLFQINKPVWMKSPtdgrYLLNRDNYDKMFPKANHfrnscARVESSKDSGVVHISAAYLVDMFLDFN-KWEDLFPtiitKARTIEVLE 313
                  67899*******************988866777777777777666799999**************************.9*999999999********* PP

                  TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  sg      g lqlm+ e+  lsplv  Rdf+f+R+++q + g+wvi+dvS + ++     ++++ R   lpSg++ie++ ng+sk+tw+eh+ +++++
  PCP032242.1 314 SGmignrsGCLQLMYEEMHILSPLVLpRDFYFLRHCQQIELGTWVIADVSYNFTKGSFVrQPQSWR---LPSGCMIEDMHNGYSKITWIEHMAVDEKT 408
                  ************************966***********************9988877666999999...****************************9 PP

                  X.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 p.hwllrslvksglaegaktwvatlqrqcek 206
                    h l+r l+ s+la ga +w  tlq+ ce+
  PCP032242.1 409 QtHRLYRDLICSSLAYGAERWIVTLQKMCER 439
                  99***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    
MELPRNHPTS GDGHEASSSR RENKKFQRHT FEQIQRLEEF FRNCTHPDDD QREQLCRELG  60
LDANQITFWF QNKRTQNKIQ DERAENIALH QLNESIRREN CIMRETLKNV VCPICGGASI  120
PEEERQLNLQ RLRQENAYLK QEHDKVANLL SKYKGKPLSL IKSLAPVVGS SQNLSPGCSL  180
SHVIARSPPL SLNLTNTAIA YQLNENVKME KALMKDIAAS AMEELIKLFQ INKPVWMKSP  240
TDGRYLLNRD NYDKMFPKAN HFRNSCARVE SSKDSGVVHI SAAYLVDMFL DFNKWEDLFP  300
TIITKARTIE VLESGMIGNR SGCLQLMYEE MHILSPLVLP RDFYFLRHCQ QIELGTWVIA  360
DVSYNFTKGS FVRQPQSWRL PSGCMIEDMH NGYSKITWIE HMAVDEKTQT HRLYRDLICS  420
SLAYGAERWI VTLQKMCERF HCLMNGCVFG GVVTLPEGKR SLMKLSQRMV KNFCGMLSMA  480
GNLDFPQLSE VVDTGIQVSV HTSTEIGQPH GMIVSVATSL WFPLSTQTIL NFFKDEKTRV  540
QWDVLSNGNP VHEIAYISTG THPENRISII RPFTPTEDNM LILQECYIDP LGSFIIYAPV  600
DLQILNVAVS GEDSSNMSIL PSGFMISRDG RPEMGGPCGS LLTVAFHILV SSPTTSKQMN  660
TELVATVNTL ISSNVEKIKV ALNCSGLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein