PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP032236.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 660aa    MW: 74049.8 Da    PI: 10.5155
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP032236.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.11.5e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien++nrqvtf+kRrng+lKKA+ELS+LCdaeva+i+fs++g+lyeys+
  PCP032236.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSILCDAEVALIVFSTRGRLYEYSN 59
                 79***********************************************95 PP

2K-box104.51.3e-3480171697
        K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                  ++s++e +a+++qqe+akL+++i++Lq+++Rhl+G+ L++Ls+keL+q+e++Le+++++iRskK+elll++ie+ qkke el++en +Lr+k
  PCP032236.1  80 STSVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLSMKELKQVENRLERGITRIRSKKHELLLAEIEYFQKKEIELENENVYLRTK 171
                  4559999***********************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSILCD AEVALIVFST RGRLYEYSNN  60
NSIRNIIERY KKACSDSTGS TSVTEINAQY YQQESAKLRQ QIQMLQNSNR HLMGDALSTL  120
SMKELKQVEN RLERGITRIR SKKHELLLAE IEYFQKKEIE LENENVYLRT KKNQRYSRAY  180
IDFKRPEDVF EFAEFFDGHV FVNEKGAQFK AIVEYAPSQR VPKPSTRRDG REGTIYKDPD  240
YLEFLKHIAK PVEHLPSAEI QLERKEAEQA GGAKEAPIVT PLMEYVRQKR AIGSGTQVSP  300
VVRKVRRRVG AGSVSKRGSP STKRVSEKKK AXVNRIANDL LLTQYIMKDS TKQTSRKEKS  360
TFNVVPRRED QLARSSGKET LENEIGSLSG IPVISDSGKK KILLIKGKER QIPPAEGMSQ  420
LGSSPVSHAP KQNQGREVSG RLVRSILSNN EGHQSQTSTE TQPQQKVQSL NADVKRVSRP  480
SNARLGLNGH GSTNELNSMS SEGDRKRGTV DRFTKKDTHG TTSVSERQEK NTRNKDRPDR  540
GVWAPLRRAD SSHASDEHLP SSGLQRPHLL SDSIEGPYGE GKDDSSYGSR TGEVINPTSG  600
RNSSHVENGS HRHFGRRGTG HNMKDDGSQN VGEGKPSKRG ATVHGAPEKQ VWVQKSSSGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.12e-86MIKC_MADS family protein