PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP032236.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 660aa MW: 74049.8 Da PI: 10.5155 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.1 | 1.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELS+LCdaeva+i+fs++g+lyeys+ PCP032236.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSILCDAEVALIVFSTRGRLYEYSN 59 79***********************************************95 PP | |||||||
2 | K-box | 104.5 | 1.3e-34 | 80 | 171 | 6 | 97 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++s++e +a+++qqe+akL+++i++Lq+++Rhl+G+ L++Ls+keL+q+e++Le+++++iRskK+elll++ie+ qkke el++en +Lr+k PCP032236.1 80 STSVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLSMKELKQVENRLERGITRIRSKKHELLLAEIEYFQKKEIELENENVYLRTK 171 4559999***********************************************************************************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 660 aa Download sequence |
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSILCD AEVALIVFST RGRLYEYSNN 60 NSIRNIIERY KKACSDSTGS TSVTEINAQY YQQESAKLRQ QIQMLQNSNR HLMGDALSTL 120 SMKELKQVEN RLERGITRIR SKKHELLLAE IEYFQKKEIE LENENVYLRT KKNQRYSRAY 180 IDFKRPEDVF EFAEFFDGHV FVNEKGAQFK AIVEYAPSQR VPKPSTRRDG REGTIYKDPD 240 YLEFLKHIAK PVEHLPSAEI QLERKEAEQA GGAKEAPIVT PLMEYVRQKR AIGSGTQVSP 300 VVRKVRRRVG AGSVSKRGSP STKRVSEKKK AXVNRIANDL LLTQYIMKDS TKQTSRKEKS 360 TFNVVPRRED QLARSSGKET LENEIGSLSG IPVISDSGKK KILLIKGKER QIPPAEGMSQ 420 LGSSPVSHAP KQNQGREVSG RLVRSILSNN EGHQSQTSTE TQPQQKVQSL NADVKRVSRP 480 SNARLGLNGH GSTNELNSMS SEGDRKRGTV DRFTKKDTHG TTSVSERQEK NTRNKDRPDR 540 GVWAPLRRAD SSHASDEHLP SSGLQRPHLL SDSIEGPYGE GKDDSSYGSR TGEVINPTSG 600 RNSSHVENGS HRHFGRRGTG HNMKDDGSQN VGEGKPSKRG ATVHGAPEKQ VWVQKSSSGS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09960.1 | 2e-86 | MIKC_MADS family protein |