PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PCP032233.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24898 Da PI: 8.7659 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.5 | 2.3e-25 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien rqvtf+kRr+g+lKKA+ELSvLCdae+ v ifss+gkl+e PCP032233.1 9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSSQGKLFEL 57 79********************************************996 PP | |||||||
2 | K-box | 48.7 | 3.3e-17 | 94 | 189 | 6 | 99 |
K-box 6 gksleeakaeslqqelakLkkeienLq..reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++ e+++ ++e++ +k+eie Lq R + + ++++l eLq Le++Le+ + ++Rs K+++l+++i+ l++ e l +nk+L+ k+e PCP032233.1 94 TEQTMETQTLDAKKEINLMKQEIEILQkgLRYRYMFDGGAGTMTLDELQVLEKHLETWIYHVRSAKMDILFQEIQLLRNSEGILAAANKYLQDKVE 189 4556778888999**************5534466777789****************************************************9986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence |
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVFIFSS QGKLFELATK 60 GSQALSTFFC TIIISMQGLI ERYMKMKPTR APQTEQTMET QTLDAKKEIN LMKQEIEILQ 120 KGLRYRYMFD GGAGTMTLDE LQVLEKHLET WIYHVRSAKM DILFQEIQLL RNSEGILAAA 180 NKYLQDKVEV NTGANDFMPI ATDNTYPLTI PNDIYEF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71692.1 | 4e-77 | MIKC_MADS family protein |