PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP032175.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 255aa MW: 29413.3 Da PI: 9.7097

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP032175.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.2	1.4e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gkl+eys+ PCP032175.1 9 KRIENKVNRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSTKGKLFEYST 59 79***********************************************96 PP
2	K-box	98.6	9.1e-33	82	174	8	100
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++e++ + s++ e+akLk+++e Lqr+q h++GedL+ Lsl+eLq+LeqqL+++lk+iRs+Kn++++e+i+elqkk k+lqe+n+ L k+++e PCP032175.1 82 ANENESTGSWTLEHAKLKARVEVLQRNQSHYMGEDLQILSLQELQNLEQQLDSALKRIRSRKNQVMYESISELQKKDKALQEQNNLLAKNVKE 174 46788899********************************************************************************99886 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MGRGRVQLKR IENKVNRQVT FSKRRSGLLK KAHEISVLCD AEVALIIFST KGKLFEYSTD 60 SCMERILERY ERYSHAERQL LANENESTGS WTLEHAKLKA RVEVLQRNQS HYMGEDLQIL 120 SLQELQNLEQ QLDSALKRIR SRKNQVMYES ISELQKKDKA LQEQNNLLAK NVKEKEKAVA 180 PQAQLDHAQK QSLDFSSTLL PQALQSLNFS RSNYHQAIRS SDGISGVNQQ DGDETAIPHR 240 PHTLLPPWML RHLNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	2e-85	MIKC_MADS family protein