PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP030931.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 537aa MW: 59651.2 Da PI: 6.3678

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP030931.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.9	9.7e-07	271	292	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H PCP030931.1 271 FCAICGKGFKRDANLRMHMRGH 292 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence
MDPKERQWDT WENPSTGNDV TNTISSDHQP FTSFKSRQHQ QKWESPSVLD YEMGVEPSFQ 60 KFHQPSDSQA SHTCNSNNDT KIPDREDGRM HDVQHPNKIQ GWDPRSTLNN LSFLEEKIHQ 120 LQDLVHVIVG RRGQVLGRPD ELVAQQQQLI TADLTSIIAQ LISTAGSLLP SVKHTLSTTI 180 PSTGQFGQLG GSFIPSAAGN DLGGKLQIHS GSKLADQANQ TDLISNFGTE HIEEHETKDE 240 EDADEGENLP PGSYEILQLE KEEILAPHTH FCAICGKGFK RDANLRMHMR GHGDEYKTPA 300 ALAKPNKESS SEPTLIKRYS CPYAGCKRNK DHKKFQPLKT ILCVKNHYKR THCDKSYTCS 360 RCNSKKFSVI ADLKTHEKHC GKDKWLCSCG TTFSRKDKLF GHIALFQGHT PAIPPDEPKG 420 TLGPTDHGEG SEVSNRVGSI NFSFGSTAPG GGGGSQNLMD VKESIDDPTS YFSPLNFETC 480 NFDGFNELPR PPFEDSESPF SFLMSVSCNY TDKTGGSRIS TIFNDTNDCS PRAYDFL

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence

MDPKERQWDT WENPSTGNDV TNTISSDHQP FTSFKSRQHQ QKWESPSVLD YEMGVEPSFQ  60
KFHQPSDSQA SHTCNSNNDT KIPDREDGRM HDVQHPNKIQ GWDPRSTLNN LSFLEEKIHQ  120
LQDLVHVIVG RRGQVLGRPD ELVAQQQQLI TADLTSIIAQ LISTAGSLLP SVKHTLSTTI  180
PSTGQFGQLG GSFIPSAAGN DLGGKLQIHS GSKLADQANQ TDLISNFGTE HIEEHETKDE  240
EDADEGENLP PGSYEILQLE KEEILAPHTH FCAICGKGFK RDANLRMHMR GHGDEYKTPA  300
ALAKPNKESS SEPTLIKRYS CPYAGCKRNK DHKKFQPLKT ILCVKNHYKR THCDKSYTCS  360
RCNSKKFSVI ADLKTHEKHC GKDKWLCSCG TTFSRKDKLF GHIALFQGHT PAIPPDEPKG  420
TLGPTDHGEG SEVSNRVGSI NFSFGSTAPG GGGGSQNLMD VKESIDDPTS YFSPLNFETC  480
NFDGFNELPR PPFEDSESPF SFLMSVSCNY TDKTGGSRIS TIFNDTNDCS PRAYDFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein