PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP030914.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 734aa    MW: 82507.6 Da    PI: 5.3235
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP030914.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.72.7e-1183597291373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+ lL+ cA+avs++d + a++lL+++++++sp gd  qRla++f+++L+arla+++++ly al++++ts    ++ l+a++++ +++P++k   + a
  PCP030914.1 359 LRALLILCAQAVSADDRRTASELLKQIRQHSSPFGDGSQRLAHCFANGLEARLAGTGTQLYTALSSKRTS---AADMLKAYQTYIKACPFMKAVIVFA 453
                  5789************************************************************999999...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N++I + +e++e++H+iDf+i +G+QWpaL++ L+ Rp+gpp+lRiTg++ p+sg   +e+++etg+rLak++e+ +vpfe+n  +ak++e++++eeL
  PCP030914.1 454 NHTISKLAEKAETLHVIDFGILYGFQWPALIHCLSRRPGGPPKLRITGIELPQSGfrPEERVQETGHRLAKYCERYNVPFEYNG-IAKKWETIQYEEL 550
                  ******************************************************9*****************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +vk++E+laVn+ ++  +llde+v+++s+rd+vL+l+++++P++++++  + ++n++ F++rf eal ++sa+fd+ +++lpre+ +r + E+e+lgr
  PCP030914.1 551 KVKRDEVLAVNSLFRFSNLLDETVAVNSPRDAVLNLIRGMNPDIFILSIVNGSYNAPFFVTRFREALFHFSAFFDMCDTNLPREDPTRLMFEEEFLGR 648
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  eivn vaceg+er+ r et+++W+ r ++aGFk++pl+ + +++ ++ ++  + + + v+e+ +++++gWk+r ++s S+W
  PCP030914.1 649 EIVNTVACEGSERVVRPETYKQWQVRNTRAGFKQLPLDRELMNKLRSKVKLGYHRDFVVDEDGNWMLQGWKGRIIYSSSCW 729
                  *****************************************************999************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    
MDPSSYQLPN SNSNFIDHTL SPNFNEYPSS DPFVDLSFVD QNPSNSTLSP SLSPEGDDSD  60
YSDSVLKYIN QVLLEEDMET KPCMFHDPLA VQAAEKTLYE VLGGKFPASP DQHPVNVESP  120
DGCSSATFSD YSGKTSSSSN STTSHSVDSW SSSVDVIEHK PSILQNPIPE NFVFQSNSMP  180
KSQFSSKGDG LVGSYVSERM LSNLFSESEM VLQFNRGVEE ASKFLPKGQL IVDLENNKPY  240
TMADRKAENV VVKMEKDESD YFSSSLRGKK SHEREDTDLE DGRSTKQSAV YEDMADLSEI  300
FDKVLICREG KPDAIGCKGE EVCQDEANKA LQQNEQSVGT SNGKTRAKKN GDKKEVVDLR  360
ALLILCAQAV SADDRRTASE LLKQIRQHSS PFGDGSQRLA HCFANGLEAR LAGTGTQLYT  420
ALSSKRTSAA DMLKAYQTYI KACPFMKAVI VFANHTISKL AEKAETLHVI DFGILYGFQW  480
PALIHCLSRR PGGPPKLRIT GIELPQSGFR PEERVQETGH RLAKYCERYN VPFEYNGIAK  540
KWETIQYEEL KVKRDEVLAV NSLFRFSNLL DETVAVNSPR DAVLNLIRGM NPDIFILSIV  600
NGSYNAPFFV TRFREALFHF SAFFDMCDTN LPREDPTRLM FEEEFLGREI VNTVACEGSE  660
RVVRPETYKQ WQVRNTRAGF KQLPLDRELM NKLRSKVKLG YHRDFVVDED GNWMLQGWKG  720
RIIYSSSCWV PSRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein