PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP030892.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 398aa MW: 45379.3 Da PI: 4.4052

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP030892.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.9	3.5e-15	164	248	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ + ++++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk+++ + + +++s+++yf++++ PCP030892.1 164 WTERETFVLLDAWGDRFLQRGKKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKERAKFAE-SGGATSKWVYFTKMD 248 ***********************************762678*******************9998.578889******7 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MDDTEDDTRY PPNLYGGNHQ QGYGSSQRQK LPARGGVPYP RPVGNDYADD EEEDETDDDE 60 ELGEEEEDNN GQNGYPSVHK GVGDDDHEDD SDDEEDEDDE EDNKMMVRRL DDDDLKTHPK 120 KRKLKSLISS YEFAPRLPAP PPPSAAAPSA PRQSIGGRNA LTDWTERETF VLLDAWGDRF 180 LQRGKKSLRS EEWQEVAEKV SEVSKIERTD TQCRNRLDTL KKKYKKERAK FAESGGATSK 240 WVYFTKMDML MSSLQQQAGL SCGLDSGEYV FMNPKVYLNR ANGLDEMRDS PGNSESSEGG 300 DDDSDGLPPK KRRYGRENDD RGSFRLLADS IQKFSDIYEK IEKSKRKQMA ELEKMRMDFH 360 RDLEQQKRQI MERAQAEIAK IQQGDDEEND NSAENASG

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MDDTEDDTRY PPNLYGGNHQ QGYGSSQRQK LPARGGVPYP RPVGNDYADD EEEDETDDDE  60
ELGEEEEDNN GQNGYPSVHK GVGDDDHEDD SDDEEDEDDE EDNKMMVRRL DDDDLKTHPK  120
KRKLKSLISS YEFAPRLPAP PPPSAAAPSA PRQSIGGRNA LTDWTERETF VLLDAWGDRF  180
LQRGKKSLRS EEWQEVAEKV SEVSKIERTD TQCRNRLDTL KKKYKKERAK FAESGGATSK  240
WVYFTKMDML MSSLQQQAGL SCGLDSGEYV FMNPKVYLNR ANGLDEMRDS PGNSESSEGG  300
DDDSDGLPPK KRRYGRENDD RGSFRLLADS IQKFSDIYEK IEKSKRKQMA ELEKMRMDFH  360
RDLEQQKRQI MERAQAEIAK IQQGDDEEND NSAENASG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	123	LKTHPKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	5e-70	Trihelix family protein