PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP030823.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 704aa MW: 76954.7 Da PI: 5.8705

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP030823.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.2	5e-07	277	297	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg PCP030823.1 277 PCPEFRK-GTCRQGDDCEYAHG 297 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MCSGSKRKPS STDMVMEREK QEGMRYSFSI LLELAACDDL EGFKRAVEEE GHDVDEASYW 60 YGRLIGSKKL GFEERTPLMI AAMFGSKNVL NYILQLCLVN VNRSCGSDRA TALHCAVDGG 120 SAASAEVVKL LLAASADSSA LDANGNQAGD LIASAYGSSF NSKKKALEGM LKGVPSIDEP 180 FDFSEQMINE TEAQEQKEIT TPRASKDGTE RKEYPVDLSL PDIKNGIYST DEFRMYTFKV 240 KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGTCRQGD DCEYAHGIFE 300 CWLHPAQYRT RLCKDETGCT RRVCFFAHKP EELRPLYAST GSAVPSPRSF SASGASLDMG 360 SITPLSLNSP SMMIPPTSTP PMTPTGPSSP RSGFMWQNNP NFAPPTLQLP GSRLKSTLSA 420 RDMDFDIDML SLEKDRRRQQ RLIDEISGSP SNWNNSLSPA SPFSASGNRT GELNSLGGVN 480 PTNLDDIFGS VDPAILPQFN GLSRDSTASQ LHSPTGMRQN MNLQARPSYS ASLSSSPGRA 540 SSMFGVDASS AAAVFSSRSA AFANRSQSFI ERSAGNRNTG VSSSADFGTL RPSNLSDWGS 600 PGGKLDWGMQ GEELNKLRKS ASFGIRSNGS SFPTASSTMP THGDEPDVSW VQSLVKDGPQ 660 PSQQRGQFGF EDQQQQQHNP NNGGPEMLPA WVEQLYFEQE QMVA

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MCSGSKRKPS STDMVMEREK QEGMRYSFSI LLELAACDDL EGFKRAVEEE GHDVDEASYW  60
YGRLIGSKKL GFEERTPLMI AAMFGSKNVL NYILQLCLVN VNRSCGSDRA TALHCAVDGG  120
SAASAEVVKL LLAASADSSA LDANGNQAGD LIASAYGSSF NSKKKALEGM LKGVPSIDEP  180
FDFSEQMINE TEAQEQKEIT TPRASKDGTE RKEYPVDLSL PDIKNGIYST DEFRMYTFKV  240
KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGTCRQGD DCEYAHGIFE  300
CWLHPAQYRT RLCKDETGCT RRVCFFAHKP EELRPLYAST GSAVPSPRSF SASGASLDMG  360
SITPLSLNSP SMMIPPTSTP PMTPTGPSSP RSGFMWQNNP NFAPPTLQLP GSRLKSTLSA  420
RDMDFDIDML SLEKDRRRQQ RLIDEISGSP SNWNNSLSPA SPFSASGNRT GELNSLGGVN  480
PTNLDDIFGS VDPAILPQFN GLSRDSTASQ LHSPTGMRQN MNLQARPSYS ASLSSSPGRA  540
SSMFGVDASS AAAVFSSRSA AFANRSQSFI ERSAGNRNTG VSSSADFGTL RPSNLSDWGS  600
PGGKLDWGMQ GEELNKLRKS ASFGIRSNGS SFPTASSTMP THGDEPDVSW VQSLVKDGPQ  660
PSQQRGQFGF EDQQQQQHNP NNGGPEMLPA WVEQLYFEQE QMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein