PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP030812.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27077.6 Da PI: 9.3541 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.3 | 6.5e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i +k++rqvtfskRr g++KKA ELSvLC +ev ++ifs +g+lye++s PCP030812.1 9 KPIADKIRRQVTFSKRRSGLIKKARELSVLCSVEVGLVIFSAKGRLYEFCS 59 6899*********************************************96 PP | |||||||
2 | K-box | 18.4 | 9.1e-08 | 119 | 195 | 15 | 92 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 ++ + e++ L+ ++ L+ + + +d+++L++ eL qLe++L+ l++ Rs K++ ++e+ +l + +l+ +++ PCP030812.1 119 KNHNSESSGLR-TNRVLKIFKSDMETQDIDNLDVPELTQLEKELDAVLRQTRSLKEKQMKEEKVRLENEIAALKLKEQ 195 55566666665.58899988999999*********************************9987766665555554444 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MGRGKVQLKP IADKIRRQVT FSKRRSGLIK KARELSVLCS VEVGLVIFSA KGRLYEFCSA 60 ERKKKDVVNS MKGEEQRKVS GYDICKVASV TNFEKLLERY QTHNDEEIAA SKTADGTDKN 120 HNSESSGLRT NRVLKIFKSD METQDIDNLD VPELTQLEKE LDAVLRQTRS LKEKQMKEEK 180 VRLENEIAAL KLKEQQSKDR AADEEADRQS TSAANNTTTT TNNSRSSDDY VPATILQLF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 5e-30 | MIKC_MADS family protein |