PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP030679.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 816aa    MW: 89061.3 Da    PI: 6.1132
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP030679.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.1e-21121176156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  ++k +++t++q++eLe++F+++++p++++r eL+++l+L+++qVk+WFqNrR+++k
  PCP030679.1 121 KKKYHRHTPNQIQELENFFKECPHPDEKQRSELSRRLSLETKQVKFWFQNRRTQMK 176
                  79999************************************************998 PP
2START178.83.1e-563355542205
                  HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT. CS
        START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg. 88 
                  la++a++elvk+a++++p+W kss   +++n +e++     +     + +ea r++ vv+ ++  lve+l+d + +W e+++    +a+t++ is+g 
  PCP030679.1 335 LALAAMDELVKMAQVDSPLWIKSSdgtDILNLEEYRAFSCIGIKpssFVTEATRDTCVVILNSLALVETLMDAN-RWAEMFQclvaRASTINMISNGm 431
                  6899**********************9999999998866665556667**************************.*********************** PP

                  .....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
        START  89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                       galq+m aelq+lspl p R   f+R+++q+ +g+w++vdvS+d +q+ +++ ++  +++lpSg+++++++n+ skvtw+eh++++++++h l
  PCP030679.1 432 dgtrnGALQVMHAELQMLSPLIPvRPLKFLRFCKQHAEGVWAVVDVSLDINQEGSNTNPFWNCRRLPSGCIVQDMPNNCSKVTWIEHTEYDENVVHPL 529
                  ************************************************************************************************** PP

                  HHHHHHHHHHHHHHHHHHHTXXXXX CS
        START 181 lrslvksglaegaktwvatlqrqce 205
                  +r+ ++sg+ +ga +w+atlqrq e
  PCP030679.1 530 FRQSLRSGMGFGAHRWLATLQRQFE 554
                  *********************9965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    
MSLGGLISSS GGGNSGGGRA RVVAEIAPHA PSFMPSGTIA HPRFHPSSPI PNSMQISSSA  60
LSLSIPKMDG HGELGFAENF DPGIIGRLRD DEYESRSGSD NFEGASGDDQ DGGGGDQPPR  120
KKKYHRHTPN QIQELENFFK ECPHPDEKQR SELSRRLSLE TKQVKFWFQN RRTQMKVIVT  180
LLGYFVTQLE RHENIILRQE NDKLRAENGV IKDAMSNPVC NNCGGPAIPG QISFEEHQLR  240
IENARLKDEL NRICTLANKF LGRPISSLGN ASSGLELGVG RTGMGGMNAV GADLPLGLDL  300
GDGISSSSPM MPLVKTCSGM MGNEVPFERS MYIDLALAAM DELVKMAQVD SPLWIKSSDG  360
TDILNLEEYR AFSCIGIKPS SFVTEATRDT CVVILNSLAL VETLMDANRW AEMFQCLVAR  420
ASTINMISNG MDGTRNGALQ VMHAELQMLS PLIPVRPLKF LRFCKQHAEG VWAVVDVSLD  480
INQEGSNTNP FWNCRRLPSG CIVQDMPNNC SKVTWIEHTE YDENVVHPLF RQSLRSGMGF  540
GAHRWLATLQ RQFESLAFLI SSANSSEDHS GIGVNGKKSM LKLAQRMVDN FCAGISASSV  600
RKWDKLCFEN VSEDTRVMAR KSMNDPGEPP GIVLSVATTV WVPVSRHRVF EFLRDEQFRK  660
EWDILSSNVP MQRIVQIAKS QGGANGVSLL RANETNANDS NMLILQETWT DPSGSLVVYA  720
PVDTESINVV MRGGDSAYVA LLPSGFAILP GGPPGYEVVK SEGNGSDGSN GCLLTVAFQI  780
LVSSLPTAKI NMESVETVST LISCTIQKIK SSLQAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein