PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP030550.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 379aa    MW: 43571.9 Da    PI: 6.5211
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP030550.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.91.1e-2770151286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  W ++e++ Li++rrem++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++     s +++y++++e
  PCP030550.1  70 WVQDETRSLIALRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGS---GSAKMSYYKEIE 151
                  ********************************************************************84...556899***997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    
MYLLEKPQPI DFYKGSRDMM MEVVVSNEEL SQSQSQAHLH PPQPQQQMLM GDSSGEDHEV  60
RAPKKRAETW VQDETRSLIA LRREMDSLFN TSKSNKHLWE QISAKMREKG FDRSPTMCTD  120
KWRNLLKEFK KAKHHDRGSG SAKMSYYKEI EEILKQRSKN PHYKSPTLPK VDSFVQFSDK  180
GIEDASISFA PVEASGRPTL NLERRLDHDG HPLAITAADA VTPGGVPPWN WRETPGNGGE  240
GQAYGGRVIL VTWGDYTRRI GIDGSADAIK DAIKSAFRLR TKRSFWLEDE DQIVRSLDRD  300
MPLGNYTLHL DEGVAIKVCL YDESDHIPVH TEEKLFYTEE DYREFLSRRG WSCLREFDGY  360
RNIENMDDLR PGAIYRGIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein