PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP030275.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 310aa    MW: 34316.3 Da    PI: 4.0124
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP030275.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.54.4e-13280302426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  e C+++++tG Ck+G++CkF+H+
  PCP030275.1 280 EDCSYYLKTGSCKFGSNCKFNHP 302
                  89********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MAISEAISLV PPDPETPSTS HAHSDQGFLP SSPDPALAPS GVDHAVLDEK LDLKEEGEDD  60
GEPDEVQKLD SIEKVEEDEA GELQKVDLKA EDEAGELQKV DLKAEDGAGE LQKVEFYEGV  120
EVPLNPTSVP SPARSDLVPE IFDWIRTLDP PVLNRIRNGD PALLHEIQQF DPAVEIRNFE  180
LSIVDEIRNF DRAFPSDLKA EEGGEGVEEE EKSYGAQEVE IVNGEKNERQ SEQSEQSDGG  240
EGWGGNQGWE EDGGGVEEKK AVETQESNRR YQYPVRPEAE DCSYYLKTGS CKFGSNCKFN  300
HPVRRKPNQV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.13e-15C3H family protein