PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP029939.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 893aa    MW: 98931.2 Da    PI: 6.6361
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP029939.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.5e-24127228199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  PCP029939.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 220
                  99*****************************8544444..48************************************************..889999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  PCP029939.1 221 LLLGIRRA 228
                  9****997 PP
2Auxin_resp114.31.1e-37253336183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPras+seFv++++ + ka++ + +svGmRf+m fete+ss rr +Gt++g+sdldp rWpnS+Wrs+k
  PCP029939.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLATYIKAVYhTCISVGMRFRMLFETEESSVRRHMGTITGISDLDPARWPNSHWRSVK 336
                  79*********************************956689****************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 893 aa     Download sequence    
MRLSSAGFSP RSQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
ADAHFPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLNPQEQKDG YLPAGLGSPN  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL ATYIKAVYHT CISVGMRFRM  300
LFETEESSVR RHMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEVEPLT  360
TFPMYPSTFP LRLKRPWPPG LPSFSGMRDD DLGMNSQLMW LQGNNGDRGM QSLSFSGMGI  420
TPWMQPRLDA SMIGLQPDMY QAMAAAALQE MRAVDPSRPL PTSHLQFQQP QSLPNRSAAL  480
MQPQMVQVSQ SQQPFLQGVQ EHHRQSQPQA QTQSHLLQQQ LQHQNSFSNQ QQQQLVDHQQ  540
IPSAVSSMTQ FASASQSQSP SLQVVTSLCQ QQSFSDSNGN PATSTILSPL HSLMGSFPQD  600
ESSHLLNLPR TNQLISSDGW PTKRAAIDPL SSGVSQCILP RAEQLGPPHI TLSQNSISLP  660
PFPGRECSLD QEGGTDPQSH LLFGVNIESS PLIMQSGMSN LRGVGSNCDS MTLHFPSSNY  720
MSTGGTDFSL QTAVTPSSCI DESGFLQSPE NADHGDPLKR NFVKVYKSGS FGRSLDITKF  780
SSYQELRNEL ARMFGLEGEL DDPVRSGWQL VFVDRENDVL LLGDDPWPEF VNSVWCIKIL  840
SPQEVQQMGK RGLELLKSVP NQRLPNNSCD DYGSRQDSRN LSSGITSVGS LEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein