PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP029668.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 362aa    MW: 41692.5 Da    PI: 8.9779
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP029668.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.61.1e-201353343
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 i n++ r++tf kRr+gi+KKA+E S+LC+++v++ii++++
  PCP029668.1 13 IANERSRKTTFQKRRKGIMKKAYEFSTLCEVDVCMIIYGPK 53
                 89*************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MNMGRGRLNM ELIANERSRK TTFQKRRKGI MKKAYEFSTL CEVDVCMIIY GPKLTDRSPE  60
LQTWPKNPEE VSRIINKYKA STMCKPAKKT FDLSDLLMDR KNKVYADIYR KRNEMYETKY  120
PAWDERINTF SESQLEALLN ALDAKLESGK RILLNRKKEA AGHQILVMKK EAPTLLMGGK  180
PDVGESSSRK HPCNYEEDQN HMSSFSNNMV DHMLQQFPHQ PCDQMLQFDN SNEYLSNLLA  240
PNPGPTAMWM LRESNYSLQF SAGASGSNSQ FPVAGNQGNF SDPMMIHSTV ENTNMNMLMV  300
NNNLNPPRSS YMSQQYYARL MQPAVPYMQY PVMPASISSH PVQLRAQAKD DQYQDVNHYL  360
WS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.15e-24M-type_MADS family protein