PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP029666.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 312aa MW: 35201.4 Da PI: 7.9751

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP029666.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	42.4	1.2e-13	235	259	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + +tGtC+y d+C+FaHg PCP029666.1 235 KTELCNKWEETGTCPYRDNCQFAHG 259 9***********************9 PP
2	zf-CCCH	26.2	1.4e-08	272	297	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt lCr +++G C+yG rC+F H+ PCP029666.1 272 YKTQLCRMVLAGGACPYGHRCHFRHS 297 9**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MEPNTNTAFP NSPDSSRRFC SDFSSNFQPI YTLPSSLSLT PSTRSSFSDT DSDEHHHSTT 60 SLNQAQLVLE YEELRDHYDL CNSHLRNLTN ELNSIRRENA QLRSVNTDLV KLLSSQAAFQ 120 SFLPSSSSSS AYQSPTATSF LDDFRRLGFG SLGLGPQDGV VSEESSDISP TSVMERNRFI 180 DADRISLPKS ISVRSSNRPR VPSVSRPMTI IKWVMVVCGK VQQSQMKVFN QGMLKTELCN 240 KWEETGTCPY RDNCQFAHGV RELRPVMRHP RYKTQLCRMV LAGGACPYGH RCHFRHSLTE 300 QEKLQLAVSD SF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	5e-48	C3H family protein