PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP029492.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 844aa    MW: 93913.3 Da    PI: 6.3657
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP029492.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.5e-22134234198
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  PCP029492.1 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 228
                  99*****************************9777666.49************************************************..8888889 PP

                  EEEEE- CS
           B3  93 vvkvfr 98 
                  +++++ 
  PCP029492.1 229 LLGIRH 234
                  999986 PP
2Auxin_resp119.42.8e-39260343183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaast+s F+v+YnPras+seFv++++k+ ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  PCP029492.1 260 AAHAASTNSCFTVFYNPRASPSEFVIPLSKYIKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 343
                  79*******************************986599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    
MKLSTSGLGQ QDHEGGAGGG GLEKKCLNSE LWHACAGPLV SLPTPGTRVV YFPQGHSDQV  60
AATTNKQVDA HIPNYPNLPP QLICQLHNVT MHADVETDEV YAQMTLQPLT PQEQKETFLP  120
MELGLPSKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFSLQPP AQELIARDLH  180
DVEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLLL GIRHATRPQT  240
VMPSSVLSSD SMHIGLLAAA AHAASTNSCF TVFYNPRASP SEFVIPLSKY IKAVFHTRVS  300
VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST SGERQPRVSL  360
WEIEPLTTFP MYPSLFPLRL KRPWIPGASS LHDNRDEANS LMWLRGGAGE QGLQSMNFQN  420
VGMFPWMQQR LDSTLIGNDH NQQYQSMLAA GLQNLGSGDQ LRQQMMHFQQ PFQYVQQPGS  480
HNPMLQLQQQ AIQQSIPHNI LQGQPQVSME NMPQQLLQQQ FNNQTDVQVQ QQQNAYQDAL  540
KVQNEQLHQS HVPSPSFTKS DFSDSSTKFS ASTTPRQNML GTLCPEGSGN LLSMSSAGHS  600
MPTEQSPQQS WASKYAHGQA NAFSNSMSFP PFNEKDNAVE QENLNSDTHN PTLFGVNIES  660
SGLLFPNTAP SFATSSNDAD ISMPLGNSGF QSSLYGCMQV SSELLHGAGQ VDPPTPNNCT  720
FVKVYKSGSV GRSIDISRFS SYHELREELG QMFGIEGKLE YRLRSGWQLV FVDREDDVLL  780
LGDDPWESFV NNVWYIKILS PEDVHKMGHR AVESFSPNTG QRLNSSGCEG QDVSGLPSLG  840
SLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein