PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP029433.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 803aa MW: 89176.2 Da PI: 9.2498

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP029433.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.6e-06	453	472	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 Cr++a+ G C yG+rCkF+H PCP029433.1 453 MCRHYAQ-GRCYYGERCKFSH 472 6****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 803 aa Download sequence
MAAPKQSKNR RYEEKDEDLW EIGESESDPE YDSDESMKDP TYRILEETHA KFSNFSIKVK 60 SKARIVQDND VGSEAEVDGQ EVVVPELDEK DRQSFENVQK IIEARQIEKL SGAMVLNGGG 120 EKKYPASTFV LNCKGDACTG DVVMFEQNVY EMFDIASRSG RGPPCGTRIV AGRIVKESYG 180 AAKQQHTFTI EVLWSKGETP LPPLHPLLIK GRNLYRLKTL RQKWEDEGER QKVLMEKHSR 240 GSLARSDREA RVQEKEIRKV LKTNRVSRKG GPEKNKSQLN STSVLKSSLQ PQQSVSLVNS 300 ANLHQPVGIS VGSGNMKAGA QQLGLFSHSA KPATQPHQSE FTAYSQKPAT GPPAISSGFF 360 VDSRKVTYQP QLRRNTTMQD RYFNQASQNL DASTNPSNVQ RVYNRTGEAL VNIYDNKSNA 420 YTVQGISFQG HQRQPLASVN HILPTCPRGQ KQMCRHYAQG RCYYGERCKF SHENEVREER 480 LRPRILVDVS RIDMSTTVLG YKISAPIMLA PTSMHQLAHP EGEVATARAA AACNTIMILS 540 SISSCTVEEV ASSCDAVRSQ AVKRYTLFEQ VFKRRDISAQ IVRRAEENGY KAIVLTVDAP 600 RPGRREADIK NKMVAPPLRN FEGLISTKVD SDKGSNLEAF AKVAYDASLC WEDIRWLKSI 660 TNLPILIKGV LTHEDARKAV EVGVAGIVVS NHGARQLDYT PSTISVLEEV VHAVGGKVPI 720 LFDGGVRRGT DVFKALALGA QAVLVGRPVV HGLAADGERG VRRVIEMLKN EFELTMALSG 780 CPSIRDITRS HVRTESDILH SML

Sequence ? help Back to Top

Protein Sequence Length: 803 aa Download sequence

MAAPKQSKNR RYEEKDEDLW EIGESESDPE YDSDESMKDP TYRILEETHA KFSNFSIKVK  60
SKARIVQDND VGSEAEVDGQ EVVVPELDEK DRQSFENVQK IIEARQIEKL SGAMVLNGGG  120
EKKYPASTFV LNCKGDACTG DVVMFEQNVY EMFDIASRSG RGPPCGTRIV AGRIVKESYG  180
AAKQQHTFTI EVLWSKGETP LPPLHPLLIK GRNLYRLKTL RQKWEDEGER QKVLMEKHSR  240
GSLARSDREA RVQEKEIRKV LKTNRVSRKG GPEKNKSQLN STSVLKSSLQ PQQSVSLVNS  300
ANLHQPVGIS VGSGNMKAGA QQLGLFSHSA KPATQPHQSE FTAYSQKPAT GPPAISSGFF  360
VDSRKVTYQP QLRRNTTMQD RYFNQASQNL DASTNPSNVQ RVYNRTGEAL VNIYDNKSNA  420
YTVQGISFQG HQRQPLASVN HILPTCPRGQ KQMCRHYAQG RCYYGERCKF SHENEVREER  480
LRPRILVDVS RIDMSTTVLG YKISAPIMLA PTSMHQLAHP EGEVATARAA AACNTIMILS  540
SISSCTVEEV ASSCDAVRSQ AVKRYTLFEQ VFKRRDISAQ IVRRAEENGY KAIVLTVDAP  600
RPGRREADIK NKMVAPPLRN FEGLISTKVD SDKGSNLEAF AKVAYDASLC WEDIRWLKSI  660
TNLPILIKGV LTHEDARKAV EVGVAGIVVS NHGARQLDYT PSTISVLEEV VHAVGGKVPI  720
LFDGGVRRGT DVFKALALGA QAVLVGRPVV HGLAADGERG VRRVIEMLKN EFELTMALSG  780
CPSIRDITRS HVRTESDILH SML