PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP029290.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

E2F/DP

Protein Properties

Length: 825aa MW: 93264.3 Da PI: 9.798

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP029290.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	52.2	1e-16	509	562	13	71
E2F_TDP 13 flkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 fl l+++ + + l+++a++L v +rRRiYDi+NVLe+++++++k+kn+++wkg PCP029290.1 509 FLGLYNRDGVTSIGLDDAASRL---GV--ERRRIYDIVNVLESVGVLARKAKNQYSWKG 562 888999888899********.....****************************98 PP
2	E2F_TDP	73.1	3e-23	612	693	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.......dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL lltq+f+kl+ +s+ ++++l+e+ak L+ + k+RRiYDi+NVL+++nliek ++k++++w g PCP029290.1 612 RREKSLALLTQNFVKLFVCSNVEMISLDEAAKLLLGDahnasvmR-TAKVRRIYDIANVLSSMNLIEKthtsdTRKPAFKWLG 693 689************************************9752.2589*****************999*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 825 aa Download sequence
MLTLQLKTAA QKNPKPSFPI LRRSLTTSPS HPSQDSHLAN LILKSDPQTL TQILHSPEID 60 WSSDLVDKTL KRLWNHGPKA LQFFKVLDHH PNYRHSCSSF DHAVDVAGRL RDYKSLWTLV 120 ARMRSRRLGP GPRTFAIITE RYVAAGKPDR AVKVFLSMHE HGCSQDLTSF NTILDVLCKA 180 KRVEKAYNLF KVFRGRFKAD CVSYNIIANG WCLIKRTPKA LELLGEMVER GLDPSLTTFN 240 IMLKGYFRAG QIKEAWEFFL QMKKRKCEID VVTYTTLVHG FGVVGEIKKA RKVFDEMVGE 300 GVLPSVATYN ALIQVLCKKD SVENAVVVFE EMVSKGYVPN VTTYNVLIRG LCHAGNMDRA 360 LEFLDRMKDD ECEPNVQTYN VVIRYFCDAG EIEKALNVFE KTGRGDCLPN LDTYNVLISA 420 MFVRKKPEDL LVAGKLLIEM VDRGFLPRRF TFNRVLDGLL LTGNQGFAKE ILRLQSKCGR 480 LPRQVKFFNT MFSHHPVLEV YGLEDQISFL GLYNRDGVTS IGLDDAASRL GVERRRIYDI 540 VNVLESVGVL ARKAKNQYSW KGFKAIPSAL QELRGLQISD DEDDVERCGS QQTENSNTNL 600 NLKPMNPKSD NRREKSLALL TQNFVKLFVC SNVEMISLDE AAKLLLGDAH NASVMRTAKV 660 RRIYDIANVL SSMNLIEKTH TSDTRKPAFK WLGLRGKEEV PQETKKRAFG TDITNVSSKR 720 GKVDSSVGGK LDGQKQKGLV GEADRSNLED SKDGSKSYQF GPFAPVTIAR AGTGSTRKVH 780 DWEKLTSTYR PQYQNQALKD LFSHYTEAWK TWYSEVAGKN PIRIS

Sequence ? help Back to Top

Protein Sequence Length: 825 aa Download sequence

MLTLQLKTAA QKNPKPSFPI LRRSLTTSPS HPSQDSHLAN LILKSDPQTL TQILHSPEID  60
WSSDLVDKTL KRLWNHGPKA LQFFKVLDHH PNYRHSCSSF DHAVDVAGRL RDYKSLWTLV  120
ARMRSRRLGP GPRTFAIITE RYVAAGKPDR AVKVFLSMHE HGCSQDLTSF NTILDVLCKA  180
KRVEKAYNLF KVFRGRFKAD CVSYNIIANG WCLIKRTPKA LELLGEMVER GLDPSLTTFN  240
IMLKGYFRAG QIKEAWEFFL QMKKRKCEID VVTYTTLVHG FGVVGEIKKA RKVFDEMVGE  300
GVLPSVATYN ALIQVLCKKD SVENAVVVFE EMVSKGYVPN VTTYNVLIRG LCHAGNMDRA  360
LEFLDRMKDD ECEPNVQTYN VVIRYFCDAG EIEKALNVFE KTGRGDCLPN LDTYNVLISA  420
MFVRKKPEDL LVAGKLLIEM VDRGFLPRRF TFNRVLDGLL LTGNQGFAKE ILRLQSKCGR  480
LPRQVKFFNT MFSHHPVLEV YGLEDQISFL GLYNRDGVTS IGLDDAASRL GVERRRIYDI  540
VNVLESVGVL ARKAKNQYSW KGFKAIPSAL QELRGLQISD DEDDVERCGS QQTENSNTNL  600
NLKPMNPKSD NRREKSLALL TQNFVKLFVC SNVEMISLDE AAKLLLGDAH NASVMRTAKV  660
RRIYDIANVL SSMNLIEKTH TSDTRKPAFK WLGLRGKEEV PQETKKRAFG TDITNVSSKR  720
GKVDSSVGGK LDGQKQKGLV GEADRSNLED SKDGSKSYQF GPFAPVTIAR AGTGSTRKVH  780
DWEKLTSTYR PQYQNQALKD LFSHYTEAWK TWYSEVAGKN PIRIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	1e-108	E2F/DP family protein