PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP029246.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 542aa    MW: 61210.3 Da    PI: 6.1334
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP029246.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS447.49.4e-1371665361374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+++L+ cA+av+++dl +aq+++ +l++++s +g+p+qRl ay++e+L ar a+s+s++ykal+++e +   s e l+++++++ev+P++kf+++ a
  PCP029246.1 166 LKQVLIFCAKAVADNDLLMAQWMMDELRQMVSVSGEPIQRLGAYLLEGLVARKASSGSNIYKALRCKEPA---SCELLSYMHILYEVCPYFKFGYMSA 260
                  5799*****************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea++ e+ vHiiDf+i+qG QW++L+qa+asRp+gpp++RiTg++++ s   +    + +g+rL+k+Ae ++vpfef++ ++ +  d++le+L
  PCP029246.1 261 NGAIAEAMKDEDSVHIIDFQIGQGSQWVTLIQAFASRPGGPPHIRITGIDDSMSAyaRGGGPNIVGKRLSKLAELFKVPFEFHT-ASMSGCDVQLEHL 357
                  ***************************************************88878888999**********************.8999********* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                   v+pgEala+n++++lh+++desv+++++rd++L+lvkslsPkvv++veqe+++n++ F  rf+e+l+yy+a+f+s++++lpr+++eri+vE+++l+r
  PCP029246.1 358 CVRPGEALAINFAFMLHHMPDESVCTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFYPRFVETLNYYTAMFESIDVTLPRDHKERINVEQHCLAR 455
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  e+vnv+aceg er+erhe l+kWr r+ +aGF+p+pls+ +++++k+ll ++++  yr+ee++g+l+lgWk+r Lv+ +aWr
  PCP029246.1 456 EVVNVIACEGVERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKTLLDNYSD-KYRLEERDGALYLGWKNRDLVASCAWR 536
                  *****************************************************5.5*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    
MSNRLYYQPV QEVEAYCLPR FQTLDPRLHY NESSQSTHLP LQSFHEHYCT LESSWSNGSY  60
NVYNTPSNVS FSPSGSPMSQ QDSHSYPSDQ YHSPDQTYSS SISGSCITDD ATDFKYKLKQ  120
LETVMLGPDS NILDNYCITF PNGTSNSLPD EDSWGQILES ISKKDLKQVL IFCAKAVADN  180
DLLMAQWMMD ELRQMVSVSG EPIQRLGAYL LEGLVARKAS SGSNIYKALR CKEPASCELL  240
SYMHILYEVC PYFKFGYMSA NGAIAEAMKD EDSVHIIDFQ IGQGSQWVTL IQAFASRPGG  300
PPHIRITGID DSMSAYARGG GPNIVGKRLS KLAELFKVPF EFHTASMSGC DVQLEHLCVR  360
PGEALAINFA FMLHHMPDES VCTQNHRDRL LRLVKSLSPK VVTLVEQESN TNTAAFYPRF  420
VETLNYYTAM FESIDVTLPR DHKERINVEQ HCLAREVVNV IACEGVERVE RHELLGKWRL  480
RFAMAGFTPY PLSSLVNATI KTLLDNYSDK YRLEERDGAL YLGWKNRDLV ASCAWRCKHS  540
TN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein