PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP029121.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 360aa MW: 42432.8 Da PI: 4.7101

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP029121.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43	1.2e-13	120	205	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++ v L+e+ ++ +l+r++l+ +W ev+ k+ ++ ++er+ qCk+ ++ l+++ykk+ke +++ +ss+++yf+++e PCP029121.1 120 EWTEHAVFMLLEVWGDRFLQLGRKSLRSDDWHEVAYKVsEASKIERTDGQCKSMLDMLKRKYKKEKEKMEEM-GLNSSKWAYFKKME 205 5***********************************677899**********************96.89999******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MDDTVDDPRY HPKSYSASHH NSSGRRKIHT RNTQYARPVP NRYAVEDDYE LDELDEGNGR 60 EDQYNDEEDK HRHGFNRNFD AEEDFERLPK KRKAKNLEPR YEFAPRVRPN WEPGFRAEEE 120 WTEHAVFMLL EVWGDRFLQL GRKSLRSDDW HEVAYKVSEA SKIERTDGQC KSMLDMLKRK 180 YKKEKEKMEE MGLNSSKWAY FKKMEMLMAS SSRQEFGLAC GIDSGEYVFM NTRVYLERSN 240 GFDEMRDSPG ESETDDDENG NDDFDVFPPR MAGMHGGDGD EGSSYRVLAD SIHKFGEIYE 300 KIESSKRQQM RELEKMRKIF NKELELQKKQ ILERAQVEIA KIQEADDDDE TDVSVEDLSE

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MDDTVDDPRY HPKSYSASHH NSSGRRKIHT RNTQYARPVP NRYAVEDDYE LDELDEGNGR  60
EDQYNDEEDK HRHGFNRNFD AEEDFERLPK KRKAKNLEPR YEFAPRVRPN WEPGFRAEEE  120
WTEHAVFMLL EVWGDRFLQL GRKSLRSDDW HEVAYKVSEA SKIERTDGQC KSMLDMLKRK  180
YKKEKEKMEE MGLNSSKWAY FKKMEMLMAS SSRQEFGLAC GIDSGEYVFM NTRVYLERSN  240
GFDEMRDSPG ESETDDDENG NDDFDVFPPR MAGMHGGDGD EGSSYRVLAD SIHKFGEIYE  300
KIESSKRQQM RELEKMRKIF NKELELQKKQ ILERAQVEIA KIQEADDDDE TDVSVEDLSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	186	KRKYKKEKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-80	Trihelix family protein