PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP028957.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 551aa    MW: 62051.5 Da    PI: 6.6076
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP028957.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.32.1e-1361755451374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+++L+ +A+av+++dl +aq++  +l++++s +g+p+qRl ay++e+L ar a+s+s++ykal+++e +   sse l+++++++ev+P++kf+++ a
  PCP028957.1 175 LKQVLIFFAKAVADNDLLMAQWMKDELRQMVSVSGEPIQRLGAYLLEGLVARKASSGSNIYKALRCKEPA---SSELLSYMHILYEVCPYFKFGYMSA 269
                  5789*****************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea++ e+rvHiiDf+i+qG QW++L+qa+asRp+gpp++RiTg++++ s   +   l+ +g+rL+k+Ae ++vpfef++ +a +  d++le+L
  PCP028957.1 270 NGAIAEAMKDENRVHIIDFQIGQGSQWITLIQAFASRPGGPPHIRITGIDDSMSAyaRGGGLNIVGNRLSKLAELFKVPFEFHA-AAVSGCDVQLEHL 366
                  ***************************************************888789999************************.8999********* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                   v+pgEala n++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F  rf+e+l+yy+a+f+s++++lpr+++eri+vE+++l+r
  PCP028957.1 367 GVRPGEALAMNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFYPRFVETLNYYTAMFESIDVTLPRDHKERINVEQHCLAR 464
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  e+vn++aceg er+erhe l+kWr r+ +aGF+p+pls+ +++++k+ll++++++ yr+ee++g+l+lgWk+r Lv+ +aWr
  PCP028957.1 465 EVVNIIACEGIERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKTLLENYSDK-YRLEERDGALYLGWKNRDLVASCAWR 545
                  *****************************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    
MQASKQQRSS GMSNRLHYQP IQEVEAYCLP RFQTLNPQLH YNESCQSTHL PMQSFGYCTL  60
ESSWSDGSYT IYNSPSNVSF SPSGSPMSQQ DSHSYPSERF HSPDQTYSPP ISGSCITDDA  120
PDFKYKLKQL ETVMLGPDSN ILDNYCINFP NGASNTLPDM DSWGPIMESI SKKDLKQVLI  180
FFAKAVADND LLMAQWMKDE LRQMVSVSGE PIQRLGAYLL EGLVARKASS GSNIYKALRC  240
KEPASSELLS YMHILYEVCP YFKFGYMSAN GAIAEAMKDE NRVHIIDFQI GQGSQWITLI  300
QAFASRPGGP PHIRITGIDD SMSAYARGGG LNIVGNRLSK LAELFKVPFE FHAAAVSGCD  360
VQLEHLGVRP GEALAMNFAF MLHHMPDESV STQNHRDRLL RLVKSLSPKV VTLVEQESNT  420
NTAAFYPRFV ETLNYYTAMF ESIDVTLPRD HKERINVEQH CLAREVVNII ACEGIERVER  480
HELLGKWRLR FAMAGFTPYP LSSLVNATIK TLLENYSDKY RLEERDGALY LGWKNRDLVA  540
SCAWRCKPST N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein