PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028924.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 461aa MW: 49980.9 Da PI: 8.3637

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028924.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.4	9e-12	75	101	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H++ PCP028924.1 75 PGEPDCIYYLRTGLCGYGSNCRFNHPK 101 5789*********************96 PP
2	zf-CCCH	38.5	2e-12	119	143	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++CkF+H++ PCP028924.1 119 QPDCGYFLKTGTCKYGSTCKFHHPR 143 789********************96 PP
3	zf-CCCH	38	2.7e-12	166	188	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G+ CkF+H++ PCP028924.1 166 SCPYYMRTGSCKFGPACKFHHPQ 188 6********************97 PP
4	zf-CCCH	37.9	3e-12	304	329	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG Ck++H++ PCP028924.1 304 DQPECRYFMNTGTCKYGIDCKYHHPK 329 689*********************96 PP
5	zf-CCCH	31.7	2.7e-10	346	371	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++f +G+CkyG++C+F H+ PCP028924.1 346 PGQPACSYFIMYGICKYGPTCRFDHP 371 57899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MSLVGEAEKS RGKQHKGRVH ANSVVPPMPD ARQALKNAVP NQSDGNVEDA FWRLTINDNQ 60 DRGGVAQANS YPDRPGEPDC IYYLRTGLCG YGSNCRFNHP KHASQGNQYN GELPERVGQP 120 DCGYFLKTGT CKYGSTCKFH HPRDRRGAGP VLFNVLGLPM HQEEKSCPYY MRTGSCKFGP 180 ACKFHHPQPQ SVGTVLPAFG SASSAVVPSS GVPYVGGVSA WSFPRAPYVS GPRLQTPQSY 240 MPVVLPPQGI VPAHGWNTYV GNMSPVSSTG ILGSNLTYNS RTQGESASNG QVHLSSPSLP 300 QRPDQPECRY FMNTGTCKYG IDCKYHHPKE RIAESAASPL GLPSRPGQPA CSYFIMYGIC 360 KYGPTCRFDH PYMEQSASYN FGMQAMPVLD SSLLSYPRGW PVAHGLETSP SIPSKSPDGV 420 KKPVSNNYQN SNTKISEDSP EQVGSLPASP SSPEPVQEES G

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MSLVGEAEKS RGKQHKGRVH ANSVVPPMPD ARQALKNAVP NQSDGNVEDA FWRLTINDNQ  60
DRGGVAQANS YPDRPGEPDC IYYLRTGLCG YGSNCRFNHP KHASQGNQYN GELPERVGQP  120
DCGYFLKTGT CKYGSTCKFH HPRDRRGAGP VLFNVLGLPM HQEEKSCPYY MRTGSCKFGP  180
ACKFHHPQPQ SVGTVLPAFG SASSAVVPSS GVPYVGGVSA WSFPRAPYVS GPRLQTPQSY  240
MPVVLPPQGI VPAHGWNTYV GNMSPVSSTG ILGSNLTYNS RTQGESASNG QVHLSSPSLP  300
QRPDQPECRY FMNTGTCKYG IDCKYHHPKE RIAESAASPL GLPSRPGQPA CSYFIMYGIC  360
KYGPTCRFDH PYMEQSASYN FGMQAMPVLD SSLLSYPRGW PVAHGLETSP SIPSKSPDGV  420
KKPVSNNYQN SNTKISEDSP EQVGSLPASP SSPEPVQEES G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-113	C3H family protein