PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028670.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 351aa MW: 39133.2 Da PI: 6.0238

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028670.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	24	1e-07	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H PCP028670.1 139 HYCEICGKGFKRDANLRMHMRAH 161 68*******************99 PP
2	zf-C2H2	13.3	0.00024	256	272	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrks L H+ PCP028670.1 256 TCGTSFSRKSKLFGHMA 272 6**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MSFPGQPFLT PPENLVQSTN EGPAAPLRNL SMVRTRMDSL QSFLTESIHA NALISKDQMD 60 MVSSGIASAI HEIISNGAAL LAFSQNPIPS SDPTRTHSAK IEASEVKKEM EVNDCGKDDA 120 DGGEIVEVDA MELLAEHIHY CEICGKGFKR DANLRMHMRA HGNRFKTPEA LAKPDKTPAQ 180 SSRNSRFSCP YVGCNRNKAH GKFRPLKSVI CVKNHFKRSH CPKMYSCNRC NKRSFSVVAD 240 LKSHLKHCGE ARWRCTCGTS FSRKSKLFGH MALFEGHMPA VEDEKSSGGS KVVTAMEQDE 300 EEEEEEEEEE GMTTLAKGIP NIYEDIEFSD ELLDGFGSID DYFWKDMLTD L

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MSFPGQPFLT PPENLVQSTN EGPAAPLRNL SMVRTRMDSL QSFLTESIHA NALISKDQMD  60
MVSSGIASAI HEIISNGAAL LAFSQNPIPS SDPTRTHSAK IEASEVKKEM EVNDCGKDDA  120
DGGEIVEVDA MELLAEHIHY CEICGKGFKR DANLRMHMRA HGNRFKTPEA LAKPDKTPAQ  180
SSRNSRFSCP YVGCNRNKAH GKFRPLKSVI CVKNHFKRSH CPKMYSCNRC NKRSFSVVAD  240
LKSHLKHCGE ARWRCTCGTS FSRKSKLFGH MALFEGHMPA VEDEKSSGGS KVVTAMEQDE  300
EEEEEEEEEE GMTTLAKGIP NIYEDIEFSD ELLDGFGSID DYFWKDMLTD L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	2e-75	C2H2 family protein