PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP028544.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | ARF | ||||||||
Protein Properties | Length: 678aa MW: 75053.7 Da PI: 6.4239 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.6 | 5.6e-24 | 116 | 216 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvlt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + ++e PCP028544.1 116 FCKVLTASDTSTHGGFSVLRKHATEClpaldmtQ--ATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLR--GGNGE 209 99****************************9543..445569************************************************4..37889 PP .EEEEE- CS B3 92 lvvkvfr 98 l+v+v+r PCP028544.1 210 LRVGVRR 216 9****98 PP | |||||||
2 | Auxin_resp | 105 | 8.6e-35 | 242 | 321 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++a+++k+svGmRfkm+fe+ed++err+sGt+vg++d++p +W +SkWrsLk PCP028544.1 242 ASHAVATQTLFVVYYKPRT--SQFIIGLNKYLEAVNNKFSVGMRFKMRFEGEDAPERRFSGTIVGLEDISP-HWADSKWRSLK 321 789***************6..9***********************************************99.*********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 678 aa Download sequence |
MANREGGDLY PELWKACAGP LVDVPRVQER VFYFPQGHME QLEASTPTNQ ELNQGIPQFN 60 LPPKIICRVV NVTLLAEQET DEVYAQITLI PDANQTEPTS PDPCLPEPQK PAVHSFCKVL 120 TASDTSTHGG FSVLRKHATE CLPALDMTQA TPTQELVAKD LHGYEWRFKH IFRGQPRRHL 180 LTTGWSTFVT SKRLSAGDSF VFLRGGNGEL RVGVRRLARQ QSSMPSSVIS SQSMHVGVLA 240 TASHAVATQT LFVVYYKPRT SQFIIGLNKY LEAVNNKFSV GMRFKMRFEG EDAPERRFSG 300 TIVGLEDISP HWADSKWRSL KVHWDESASI PRPDRVSPWE IEPFVASVIP SLPQPSVVVK 360 NKRPRPPTEI PALGSATWNS GLTQPHDMST LSVAAEGKRS ENHVVWHHQQ ADVISNNNNV 420 PRTQTDGGWL SSQAGGSPHM FQETMEDSKS VSAWPVFSGY STPNSSKPKN DSMFDHVEKE 480 KKTEMGTSCR IFGIDFTSHS TCFPAMEKAP PQPISGSTGT TEGRVSNMLA AESDQKSDLS 540 KASKESKPGQ LQVSPKETQS KQSCSTSARS RTKVQMQGIA VGRAVDLTML EGYDQLIDEL 600 EEMFDIKGQI RPGNMWQIVF TDNEGDMMLM GDDPWSEFCD MVKRIFICSS QDVKKISAGC 660 ELPMSSLEVE GGTVISSD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 362 | 366 | KRPRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | ARF family protein |