PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028544.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ARF

Protein Properties

Length: 678aa MW: 75053.7 Da PI: 6.4239

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028544.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.6	5.6e-24	116	216	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvlt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + ++e PCP028544.1 116 FCKVLTASDTSTHGGFSVLRKHATEClpaldmtQ--ATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLR--GGNGE 209 99**************************9543..445569********************************************4..37889 PP .EEEEE- CS B3 92 lvvkvfr 98 l+v+v+r PCP028544.1 210 LRVGVRR 216 9**98 PP
2	Auxin_resp	105	8.6e-35	242	321	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++a+++k+svGmRfkm+fe+ed++err+sGt+vg++d++p +W +SkWrsLk PCP028544.1 242 ASHAVATQTLFVVYYKPRT--SQFIIGLNKYLEAVNNKFSVGMRFKMRFEGEDAPERRFSGTIVGLEDISP-HWADSKWRSLK 321 789*************6..9*******************************************99.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence
MANREGGDLY PELWKACAGP LVDVPRVQER VFYFPQGHME QLEASTPTNQ ELNQGIPQFN 60 LPPKIICRVV NVTLLAEQET DEVYAQITLI PDANQTEPTS PDPCLPEPQK PAVHSFCKVL 120 TASDTSTHGG FSVLRKHATE CLPALDMTQA TPTQELVAKD LHGYEWRFKH IFRGQPRRHL 180 LTTGWSTFVT SKRLSAGDSF VFLRGGNGEL RVGVRRLARQ QSSMPSSVIS SQSMHVGVLA 240 TASHAVATQT LFVVYYKPRT SQFIIGLNKY LEAVNNKFSV GMRFKMRFEG EDAPERRFSG 300 TIVGLEDISP HWADSKWRSL KVHWDESASI PRPDRVSPWE IEPFVASVIP SLPQPSVVVK 360 NKRPRPPTEI PALGSATWNS GLTQPHDMST LSVAAEGKRS ENHVVWHHQQ ADVISNNNNV 420 PRTQTDGGWL SSQAGGSPHM FQETMEDSKS VSAWPVFSGY STPNSSKPKN DSMFDHVEKE 480 KKTEMGTSCR IFGIDFTSHS TCFPAMEKAP PQPISGSTGT TEGRVSNMLA AESDQKSDLS 540 KASKESKPGQ LQVSPKETQS KQSCSTSARS RTKVQMQGIA VGRAVDLTML EGYDQLIDEL 600 EEMFDIKGQI RPGNMWQIVF TDNEGDMMLM GDDPWSEFCD MVKRIFICSS QDVKKISAGC 660 ELPMSSLEVE GGTVISSD

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence

MANREGGDLY PELWKACAGP LVDVPRVQER VFYFPQGHME QLEASTPTNQ ELNQGIPQFN  60
LPPKIICRVV NVTLLAEQET DEVYAQITLI PDANQTEPTS PDPCLPEPQK PAVHSFCKVL  120
TASDTSTHGG FSVLRKHATE CLPALDMTQA TPTQELVAKD LHGYEWRFKH IFRGQPRRHL  180
LTTGWSTFVT SKRLSAGDSF VFLRGGNGEL RVGVRRLARQ QSSMPSSVIS SQSMHVGVLA  240
TASHAVATQT LFVVYYKPRT SQFIIGLNKY LEAVNNKFSV GMRFKMRFEG EDAPERRFSG  300
TIVGLEDISP HWADSKWRSL KVHWDESASI PRPDRVSPWE IEPFVASVIP SLPQPSVVVK  360
NKRPRPPTEI PALGSATWNS GLTQPHDMST LSVAAEGKRS ENHVVWHHQQ ADVISNNNNV  420
PRTQTDGGWL SSQAGGSPHM FQETMEDSKS VSAWPVFSGY STPNSSKPKN DSMFDHVEKE  480
KKTEMGTSCR IFGIDFTSHS TCFPAMEKAP PQPISGSTGT TEGRVSNMLA AESDQKSDLS  540
KASKESKPGQ LQVSPKETQS KQSCSTSARS RTKVQMQGIA VGRAVDLTML EGYDQLIDEL  600
EEMFDIKGQI RPGNMWQIVF TDNEGDMMLM GDDPWSEFCD MVKRIFICSS QDVKKISAGC  660
ELPMSSLEVE GGTVISSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	362	366	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.2	0.0	ARF family protein