PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028526.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 612aa MW: 69980.5 Da PI: 6.5594

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028526.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.5	2e-29	113	198	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r+ ++++++++++k+plW+evs+ m +e+gf+r+ k+Ckek+enl k+ykk+keg+ +r ++ +++++f+qlea PCP028526.1 113 RWPRQETLTLLEIRSALDSKFKETNQKGPLWDEVSRIMaEEHGFQRTGKKCKEKFENLYKYYKKTKEGKTGR--QDGKHYRFFRQLEA 198 8***********************************999*************************98..55667*****85 PP
2	trihelix	64.7	2e-20	413	499	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt++ev Li++++++e+++++++ ++++ Wee++++m + g++rs +Ckekwen + +k ++e++k ++++++++ yf+q+ PCP028526.1 413 RWTEHEVTSLIQLKTSLERTFKESEylKEEGVWEEIAANMGSLGYTRSGGECKEKWENESVCFKMTTESNKMHKQDTKTNNTYFSQI 499 8*******************9977799****************************************99999999*998 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
MDDYGPPDLR QLMASRTQFH TPLQFPEQFS VHQNLTPPPP PPPHYRHLPI MLSSEVVPSA 60 GLLDNHRYTS MITTTACHPT TSSAASAAAA LYGIEFEHGW NNIDGANTNN NSRWPRQETL 120 TLLEIRSALD SKFKETNQKG PLWDEVSRIM AEEHGFQRTG KKCKEKFENL YKYYKKTKEG 180 KTGRQDGKHY RFFRQLEAIY GNHHQSTNQS SVYSRPNPLL CHTTPSNSIN RDQNQEVVVQ 240 DQKFISCESL SFSNNSTEFD QTSPSKNNDD EDSLSAIDYF PMNQSTGSLK NEKKSYATPV 300 KKKWKAKVVD FMNSQMGKVI KTQEALMEKM VKSIEASADE RIAKEEEWRK QEAAKYERDV 360 HEFWAKERAW VETRDAAIME TLRKYTGKGT YNNSGKDDIA KEIGSDHSKN YPRWTEHEVT 420 SLIQLKTSLE RTFKESEYLK EEGVWEEIAA NMGSLGYTRS GGECKEKWEN ESVCFKMTTE 480 SNKMHKQDTK TNNTYFSQIS GYEEGHEVRN QRQDGMGLQL MDEGLSPSCS NMDVNSSSLH 540 IPFNGGENLW DERDSYEWNC SSARESTSTK LEQGKKALTG GLLRKAGEEN EMYTSSCGSR 600 FSFWKNISHG SD

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

MDDYGPPDLR QLMASRTQFH TPLQFPEQFS VHQNLTPPPP PPPHYRHLPI MLSSEVVPSA  60
GLLDNHRYTS MITTTACHPT TSSAASAAAA LYGIEFEHGW NNIDGANTNN NSRWPRQETL  120
TLLEIRSALD SKFKETNQKG PLWDEVSRIM AEEHGFQRTG KKCKEKFENL YKYYKKTKEG  180
KTGRQDGKHY RFFRQLEAIY GNHHQSTNQS SVYSRPNPLL CHTTPSNSIN RDQNQEVVVQ  240
DQKFISCESL SFSNNSTEFD QTSPSKNNDD EDSLSAIDYF PMNQSTGSLK NEKKSYATPV  300
KKKWKAKVVD FMNSQMGKVI KTQEALMEKM VKSIEASADE RIAKEEEWRK QEAAKYERDV  360
HEFWAKERAW VETRDAAIME TLRKYTGKGT YNNSGKDDIA KEIGSDHSKN YPRWTEHEVT  420
SLIQLKTSLE RTFKESEYLK EEGVWEEIAA NMGSLGYTRS GGECKEKWEN ESVCFKMTTE  480
SNKMHKQDTK TNNTYFSQIS GYEEGHEVRN QRQDGMGLQL MDEGLSPSCS NMDVNSSSLH  540
IPFNGGENLW DERDSYEWNC SSARESTSTK LEQGKKALTG GLLRKAGEEN EMYTSSCGSR  600
FSFWKNISHG SD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	2e-77	Trihelix family protein