PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP028488.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 854aa    MW: 94539.1 Da    PI: 6.6172
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP028488.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37.2e-24150251199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt sd++++g +++pk+ a+e+       ++++   ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv  ++L +gD ++F   + +++e
  PCP028488.1 150 FSKILTASDTSTHGGFSVPKRQADEClppldmsQQPPV--QDLVAKDLQGYEWCFRHIFRGQPKRHLLTSGWSTFVTTKRLVAGDACIFA--RGENGE 243
                  889****************************7544444..48************************************************..449999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  PCP028488.1 244 LCVGIRRA 251
                  ******97 PP
2Auxin_resp93.34.1e-31276359183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a ha+st+++F+v+Y+P++s++ F++++++++k+ ++ +s+GmRf+m  e+e+++e++   Gt+++++d d + Wp S+Wr+Lk
  PCP028488.1 276 AFHAISTGTMFTVYYHPWTSPAAFIIPFDQYMKSAENDYSIGMRFRMYSEGEECAEKKRlEGTIIDIEDNDCLMWPSSEWRCLK 359
                  689**************************************************9988766**********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    
MAPRTAAGVE GLPSTASVNA IESSGCTDAA VPAANNNQGE KDDLYHQLWH ACAGANVYVP  60
RPGEKVFYFL QGHMEQVEAY ANQDGKMEMP RYNLPSKILC NVVCVQLKAE AHTDEVYAQI  120
TLLPVTEEDQ VRGEEENTPP LPRRTSTRSF SKILTASDTS THGGFSVPKR QADECLPPLD  180
MSQQPPVQDL VAKDLQGYEW CFRHIFRGQP KRHLLTSGWS TFVTTKRLVA GDACIFARGE  240
NGELCVGIRR ATKTHDTAST SLISGHSMQH GILASAFHAI STGTMFTVYY HPWTSPAAFI  300
IPFDQYMKSA ENDYSIGMRF RMYSEGEECA EKKRLEGTII DIEDNDCLMW PSSEWRCLKV  360
RLDTTSDTCL HSERLSPWNI IPLQPKKRAH LPDPPSPGVS SLGRKGSLAI SVESTPPRQK  420
KVFQGQETSD PPAHEPVTPK QLLPPQFIPP PNPDWDYTDL GLQNNLNVPM NDPFYQCPGY  480
PKAPSLTNQW PPMFGLGVFD SGTYKRSMSV PNISSSVSQK LRAFELRSET QSPLVEQKST  540
MLFGVNIVTS HPELPSPQVA NSIELCSPCS IPPISHSSVS ETVQLSETSK SISGVLSEKQ  600
CKKCSSVNNR SCIKVLKYGA PVGRSIDLTC FDGYNELICE LDQMFDFKGS LIDGNSGCQT  660
KSNTKGGKKT PPQSKTMKSL SPARPITSLP TLPPTSCREI SALINIATPA LNFRVPRHPI  720
CLRNDIRKPQ TAVRSQFSSN PQSNEDRDAQ VQDLVVPQHW LTPSKALEES EWLRVTLHKW  780
LDDEYCPEST NVEISKIAAQ SFYKSLLEKQ TDLGEILLKM AIELESISYQ ESFHGAFSSA  840
NAAVNLISQR IEQA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-150ARF family protein