PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028377.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 473aa MW: 53642.7 Da PI: 6.1054

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028377.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.8	7e-24	96	195	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+ +v++Li a+ +++++ ++g +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ ++++ PCP028377.1 96 KWTDTMVRLLIMAVFYIGDEASDGPdptgkkkpaggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQGLLEK 193 7*******************9866677788999999********************************************55999999999999 PP trihelix 85 le 86 ++ PCP028377.1 194 MD 195 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MEANGLFSGM LGLEMPLHQN PQNPPNPQNP HNPMHQPQMV PYAPHHDPDP HQNPHQSVKQ 60 GYPFAPKSKQ IALSDDDEPG FGADDKRKIS PWQRMKWTDT MVRLLIMAVF YIGDEASDGP 120 DPTGKKKPAG GLLQKKGKWK SVSRAMMEKG FYVSPQQCED KFNDLNKRYK RVNDILGKGT 180 ACRVVENQGL LEKMDLAPKM KEEVRKLLNS KHLFFREMCA YHNSCGHGTV GGASNGAHNS 240 PPEAATEPSE IPPQQQQQRC FHSSENAQAV ANSGRSETEG SKMVVGGSGG EDEDEDDEDD 300 DSVDEDDEEE DEVVGGGCRG QIGHGNHEDD DDNNDERAPR KMARKEGCRA GSASSSQLMQ 360 QLSCEMRVVM QDVTKTPWEK QQWLKTRLIQ LEEQQVSYQY QAFELEKQRL KWIKYSGKKE 420 RDMERAKLEN ERRRLENERM LLLVRRKELE LHHQQQQQQN SSNKRSDPSS LTG

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MEANGLFSGM LGLEMPLHQN PQNPPNPQNP HNPMHQPQMV PYAPHHDPDP HQNPHQSVKQ  60
GYPFAPKSKQ IALSDDDEPG FGADDKRKIS PWQRMKWTDT MVRLLIMAVF YIGDEASDGP  120
DPTGKKKPAG GLLQKKGKWK SVSRAMMEKG FYVSPQQCED KFNDLNKRYK RVNDILGKGT  180
ACRVVENQGL LEKMDLAPKM KEEVRKLLNS KHLFFREMCA YHNSCGHGTV GGASNGAHNS  240
PPEAATEPSE IPPQQQQQRC FHSSENAQAV ANSGRSETEG SKMVVGGSGG EDEDEDDEDD  300
DSVDEDDEEE DEVVGGGCRG QIGHGNHEDD DDNNDERAPR KMARKEGCRA GSASSSQLMQ  360
QLSCEMRVVM QDVTKTPWEK QQWLKTRLIQ LEEQQVSYQY QAFELEKQRL KWIKYSGKKE  420
RDMERAKLEN ERRRLENERM LLLVRRKELE LHHQQQQQQN SSNKRSDPSS LTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	2e-74	Trihelix family protein