PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028375.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 521aa MW: 56848.7 Da PI: 6.9726

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028375.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.7	3.2e-18	142	228	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ +l+L++a+ ++ ++l+rg+l++ +Weev++ + + + ++s +qCk+k +nl+kryk ++++++++ s s++p+f+++e PCP028375.1 142 EWSDTAILCLLDAYLDKLTQLNRGNLRGRDWEEVAAIVseKCERQRKSIEQCKNKVDNLKKRYKLERHRMSSG-GVSASHWPWFQKME 228 5***********************************54445567799*******************9.566679*****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
MASCDDDFSL LGDDSNPNHH LPHAPTSHHI HQPYEPPHRF PTRTPPVHAP PSQPTLKDKV 60 NDGEDHADDG DDYENAAATA FCSNPFDRGT DQTDIVTGAG EKRKDHSDEH RDGGGGGGAP 120 CSYKKSKALA SASGDYRKDR EEWSDTAILC LLDAYLDKLT QLNRGNLRGR DWEEVAAIVS 180 EKCERQRKSI EQCKNKVDNL KKRYKLERHR MSSGGVSASH WPWFQKMELI VGNSVAARAT 240 SDDDKGVSSS GNTPRQSKRY GMVVSSPVGQ MNKVKSAPTI KWRRVVFKIS GAALAGAAPN 300 NVDSKLAMLI AREVALACRN GVELAIVVGG RNFFCGDAWV TATGLDRSTA YQIGMMATVM 360 NSVLLQSALE KMGVQTRVQT AFSMHEVAEP YNRQRAIRHL EKGRVVIFAG IGAGTGNPIF 420 STDTAAALQA LEINAEAVLK GTNVDGVYDC NSQDNNFTFE HISFRELVTR GATSMDSMAL 480 NFCEEHRFPV VVFNLLEPGN ISKALCGEQV GTLIDQTGRI S

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

MASCDDDFSL LGDDSNPNHH LPHAPTSHHI HQPYEPPHRF PTRTPPVHAP PSQPTLKDKV  60
NDGEDHADDG DDYENAAATA FCSNPFDRGT DQTDIVTGAG EKRKDHSDEH RDGGGGGGAP  120
CSYKKSKALA SASGDYRKDR EEWSDTAILC LLDAYLDKLT QLNRGNLRGR DWEEVAAIVS  180
EKCERQRKSI EQCKNKVDNL KKRYKLERHR MSSGGVSASH WPWFQKMELI VGNSVAARAT  240
SDDDKGVSSS GNTPRQSKRY GMVVSSPVGQ MNKVKSAPTI KWRRVVFKIS GAALAGAAPN  300
NVDSKLAMLI AREVALACRN GVELAIVVGG RNFFCGDAWV TATGLDRSTA YQIGMMATVM  360
NSVLLQSALE KMGVQTRVQT AFSMHEVAEP YNRQRAIRHL EKGRVVIFAG IGAGTGNPIF  420
STDTAAALQA LEINAEAVLK GTNVDGVYDC NSQDNNFTFE HISFRELVTR GATSMDSMAL  480
NFCEEHRFPV VVFNLLEPGN ISKALCGEQV GTLIDQTGRI S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein