PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028266.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

GATA

Protein Properties

Length: 656aa MW: 72148.1 Da PI: 5.2422

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028266.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.8	6.4e-18	552	586	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++ PCP028266.1 552 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 586 ********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence
MSLRPSARTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLLKKRR EGLQAQQFAP 60 SLQPSNLEKK LESLPAMVAG VWSDDNNLQL ESTTQFRKLL SIERSPPIEE VIQSGVVPRF 120 VTFLMREDFP QLQFEAAWAL TNIASGTSEN TKVVIEQGAV PIFVKLLASP SDDVREQAVW 180 ALGNVAGDSP RCRDLVLGSG ALMPLLAQLN EHAKLSMLRN ATWTLSNFCR GKPQPPFDQV 240 KPALPALERL VHSNDEEVLT DACWALSYLS DGTNDKIQAV IEAGVCVRLV QLLLHPSPSV 300 LIPALRTVGN IVTGDDLQTQ SVIEAGLIGP LVNLLQHAEF DIKKEAAWAI SNATSGGTPD 360 QIKYLVGEGC IKPLCDLLVC PDPRIVTVCL EGLENILKVG EAEKAAGNSG EVNLYAQLID 420 DAEGLEKIEN LQSHDNTEIY EKSVKILETY WLEEDEETLP AGDGTQQGFR FEGNEVQGLL 480 IEWSRSSDEG QVLGQVWSSW SGSAASLVSG FSLVRRPSWT EMPRVGQGSE SDEMTIKTPD 540 AGSSEEGFKK TCADCGTSKT PLWRGGPAGP KSLCNACGIR SRKKRRAILG LNKENPNDKK 600 GKKNKQLGDG LKQRLLALGR EVLMQRSTVE RQQRKLGEEE QAAVLLMALS YGSVYA

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence

MSLRPSARTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLLKKRR EGLQAQQFAP  60
SLQPSNLEKK LESLPAMVAG VWSDDNNLQL ESTTQFRKLL SIERSPPIEE VIQSGVVPRF  120
VTFLMREDFP QLQFEAAWAL TNIASGTSEN TKVVIEQGAV PIFVKLLASP SDDVREQAVW  180
ALGNVAGDSP RCRDLVLGSG ALMPLLAQLN EHAKLSMLRN ATWTLSNFCR GKPQPPFDQV  240
KPALPALERL VHSNDEEVLT DACWALSYLS DGTNDKIQAV IEAGVCVRLV QLLLHPSPSV  300
LIPALRTVGN IVTGDDLQTQ SVIEAGLIGP LVNLLQHAEF DIKKEAAWAI SNATSGGTPD  360
QIKYLVGEGC IKPLCDLLVC PDPRIVTVCL EGLENILKVG EAEKAAGNSG EVNLYAQLID  420
DAEGLEKIEN LQSHDNTEIY EKSVKILETY WLEEDEETLP AGDGTQQGFR FEGNEVQGLL  480
IEWSRSSDEG QVLGQVWSSW SGSAASLVSG FSLVRRPSWT EMPRVGQGSE SDEMTIKTPD  540
AGSSEEGFKK TCADCGTSKT PLWRGGPAGP KSLCNACGIR SRKKRRAILG LNKENPNDKK  600
GKKNKQLGDG LKQRLLALGR EVLMQRSTVE RQQRKLGEEE QAAVLLMALS YGSVYA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	583	603	KKRRAILGLNKENPNDKKGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06740.1	5e-47	GATA family protein