PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP028167.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 2466aa MW: 272595 Da PI: 5.2015

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP028167.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.4	1.6e-10	482	527	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++L + +eY++ Lq PCP028167.1 482 HSIAERLRREKIADRMKNLQELVPNS-----NKTDKASMLDEIIEYVRLLQ 527 99*********************7.....5**************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 2466 aa Download sequence
MEDDAFSFTP TSRNPSTIPI NVDDDDDGDG DGDLRSITAS LLKSAPKPTE ASNFIDLSEE 60 TLDFYDGDDE LRILSVPDFV CEICVDHKSG IELFRIENCS HGYCTDCMVK YVASKLQENI 120 TSIRCPVPDC IGLLEPEYCR PILPREVFDR WGTAMCEAVI LGSEKFYCPY KDCSAMLIDD 180 GSEVVRQSEC PNCWRMFCAH CKVPWHEGID CEEFVRLNKE DIMLMNLAKE KQWPRCPNCR 240 FFVEKSVGCM FMMCRCFHHL PSSPHHPIKS RQGKVMRIFL QLPLALVAVD EHEDTSSPTY 300 LTNSYNSLES RVAQDVSSIL QDFEPDAQEG GKNCEVQNMG MQYGVDGNMV RTSLPSIAPE 360 NVGCISFEPP IFPGFNGDFE TLSPISQVWP LQSYEGVPSA IIPGMGQHQV CSFGMNRDYG 420 DNDIYSIKGM HDVRNYPLPS FSSAPRMPGL QTLPQNTAPA GECAGTGKPR MRACRDQATD 480 PHSIAERLRR EKIADRMKNL QELVPNSNKT DKASMLDEII EYVRLLQLQV KVKNGLPQLP 540 SIGQEADISF DETALEQAVR LMESDANKAM QHLKSKSFCL MPVALADAIS TGKELSSSPS 600 APVSDDWQKT KTGFAGVAHN NSSSSSNSSC SPDQGFGFWG NFAQRRIAIE EERKALLLVE 660 DSGSGSFWRS EPPNVSRDFW MPDQSCRVCY ACDSQFTIFN RRHHCRLCGR VFCAKCTANS 720 IPAASDEPRV GREDWERIRV CNYCFQQWEQ GVAAPNNAAT PAASPGLSPS PSVTSLASTK 780 SSCTCHSSSS TIGSTPYSTG PYQRVPYSSG QSPSQSSSEI YSVPVQPDIV TSQTSISSDV 840 AMAEPSPNLY GFCMNRSDDE DDDYGVYRLD SEPSHFSHGN DYYGAVTIEE FASVYGPQNV 900 HLDGDNTSSF LPGSFDTQDV VGIQKIEEDQ YEHDNDDECG TSPYDLQSTN TEPVDFENNG 960 LLWLPPEPED EEDEREAVLF DDDDYDGGGS GGGAGEWGYL GSSNGFGNGE CRTREKSIEE 1020 HRKAMKNVVE GHFRALVSQL LQVENLPRGD EGNNESWLDI ITSLSWEAAM LLKPDTSKGG 1080 GMDPGGYVKV KCIACGRRID SMVVKGVVCK KNVAHRRMTS QKEKPRFLIL GGALEYQRVS 1140 NLLSSFDTLL QQEMDHLKMA VAKIDSHHPN VLLVEKSVSR YAQDYLLAKD ISLVLNIKRP 1200 LLERIARCTG AQIVPSIDHL TSPKLGFCDM FNVKKFPEVH GSAGQGGKKL TKTLMFFEGC 1260 PKPLGVTIML HGANGDELKK VKHVVQYGVF AAYHLALETS FLADEGASLP ELPLKSAITV 1320 ALPDKPSSVD RSISTIPGFS VPPASKPQGP NASSELQKSN QGLIIDSNSS TTSGPILNPQ 1380 GADSICSSKA CSQAFLIEHA SSSRESRSLF TSLSLPQEDI TESYSKELPS ICASENKIDV 1440 GSKDSCLDNS AQAGEALVNN VLISNSLATS EALGHGGGAL AATLGETPEF TSIKHHSDNQ 1500 NEEVGSSKEE FLPSPSDHQS ILVSLSTRCV WKGTVCEQSH LCRIKYYGSF DKPLGRFLRD 1560 HLFDQNYLCR SCGMPSEAHV HCYTHRQGSL TISVKKLPEI LLPGEREGKI WMWHRCLKCP 1620 RTNGFPPATR RVVMSDAAWG LSFGKFLELS FSNHAAANRV ATCGHSLHRD CLRFYGFGRM 1680 VACFSYASIH VHSVYLPPQK LEFHNDNQEW IQKEAEEVGH RAELLFTELR NALNQILEKR 1740 PISGTADGGK KAPESSQIVE LEEMLQKERE DFEESLQKTM HKEVKFGQPA VDILEINRLR 1800 RQLLFHSYIW DQRLIQAASL SKKSFQEGLS SSLPKLKEKP ISSMEKLVDT NINSMPGKGL 1860 SSSDSSLRET KPDVSIYQGG DVGSFSQPGG EQNTNEMVQD QNHSNEAKNF TPSSDNSIDE 1920 SDPLESGTSV RRTLSEGNES PVVANLSDTL DAAWTGESHP TSTIPKENDY SLPDSTLVNS 1980 ATVLRKVESN SDLQNCAVDQ AGVKATAPTH SLSSKSLKVF DKNYSFNSQK IIIGEYNPVN 2040 VSMFRELERQ SGARLLLPIG VNDSVIPVFD DEPTSVIAYA LVSSDYHLQI SESERPRDAL 2100 DSSVSLPLFD SANLLSLSSF DESLSETYRN LGSSDEGMLS LSRSRSSQAL DSLLSKDIHA 2160 RVSFTDGGPL GKVKYTVTCY YATRFEALRR TCCPSERDFV RSLSRCKKWG AQGGKSNVFF 2220 AKTLDDRFII KQVTKTELES FIKFAPSYFK YLSESISTRS PTCLAKVLGI YQVSSKHGKA 2280 GKESKMDVLV MENLLFRRNV TRLYDLKGSS RSRYNPDTSG SNKVLLDQNL IEAMPTSPIF 2340 VGNKAKRVLE RAVWNDTAFL ASIDVMDYSL LVGVDEEKDE LVLGIIDFMR QYTWDKHLET 2400 WVKTSGILGG AKNTSPTVIS PQQYKKRFRK AMTTYFLMVP DQWSPLTIVP SGSQSDVGEE 2460 NAQDPT

Sequence ? help Back to Top

Protein Sequence Length: 2466 aa Download sequence

MEDDAFSFTP TSRNPSTIPI NVDDDDDGDG DGDLRSITAS LLKSAPKPTE ASNFIDLSEE  60
TLDFYDGDDE LRILSVPDFV CEICVDHKSG IELFRIENCS HGYCTDCMVK YVASKLQENI  120
TSIRCPVPDC IGLLEPEYCR PILPREVFDR WGTAMCEAVI LGSEKFYCPY KDCSAMLIDD  180
GSEVVRQSEC PNCWRMFCAH CKVPWHEGID CEEFVRLNKE DIMLMNLAKE KQWPRCPNCR  240
FFVEKSVGCM FMMCRCFHHL PSSPHHPIKS RQGKVMRIFL QLPLALVAVD EHEDTSSPTY  300
LTNSYNSLES RVAQDVSSIL QDFEPDAQEG GKNCEVQNMG MQYGVDGNMV RTSLPSIAPE  360
NVGCISFEPP IFPGFNGDFE TLSPISQVWP LQSYEGVPSA IIPGMGQHQV CSFGMNRDYG  420
DNDIYSIKGM HDVRNYPLPS FSSAPRMPGL QTLPQNTAPA GECAGTGKPR MRACRDQATD  480
PHSIAERLRR EKIADRMKNL QELVPNSNKT DKASMLDEII EYVRLLQLQV KVKNGLPQLP  540
SIGQEADISF DETALEQAVR LMESDANKAM QHLKSKSFCL MPVALADAIS TGKELSSSPS  600
APVSDDWQKT KTGFAGVAHN NSSSSSNSSC SPDQGFGFWG NFAQRRIAIE EERKALLLVE  660
DSGSGSFWRS EPPNVSRDFW MPDQSCRVCY ACDSQFTIFN RRHHCRLCGR VFCAKCTANS  720
IPAASDEPRV GREDWERIRV CNYCFQQWEQ GVAAPNNAAT PAASPGLSPS PSVTSLASTK  780
SSCTCHSSSS TIGSTPYSTG PYQRVPYSSG QSPSQSSSEI YSVPVQPDIV TSQTSISSDV  840
AMAEPSPNLY GFCMNRSDDE DDDYGVYRLD SEPSHFSHGN DYYGAVTIEE FASVYGPQNV  900
HLDGDNTSSF LPGSFDTQDV VGIQKIEEDQ YEHDNDDECG TSPYDLQSTN TEPVDFENNG  960
LLWLPPEPED EEDEREAVLF DDDDYDGGGS GGGAGEWGYL GSSNGFGNGE CRTREKSIEE  1020
HRKAMKNVVE GHFRALVSQL LQVENLPRGD EGNNESWLDI ITSLSWEAAM LLKPDTSKGG  1080
GMDPGGYVKV KCIACGRRID SMVVKGVVCK KNVAHRRMTS QKEKPRFLIL GGALEYQRVS  1140
NLLSSFDTLL QQEMDHLKMA VAKIDSHHPN VLLVEKSVSR YAQDYLLAKD ISLVLNIKRP  1200
LLERIARCTG AQIVPSIDHL TSPKLGFCDM FNVKKFPEVH GSAGQGGKKL TKTLMFFEGC  1260
PKPLGVTIML HGANGDELKK VKHVVQYGVF AAYHLALETS FLADEGASLP ELPLKSAITV  1320
ALPDKPSSVD RSISTIPGFS VPPASKPQGP NASSELQKSN QGLIIDSNSS TTSGPILNPQ  1380
GADSICSSKA CSQAFLIEHA SSSRESRSLF TSLSLPQEDI TESYSKELPS ICASENKIDV  1440
GSKDSCLDNS AQAGEALVNN VLISNSLATS EALGHGGGAL AATLGETPEF TSIKHHSDNQ  1500
NEEVGSSKEE FLPSPSDHQS ILVSLSTRCV WKGTVCEQSH LCRIKYYGSF DKPLGRFLRD  1560
HLFDQNYLCR SCGMPSEAHV HCYTHRQGSL TISVKKLPEI LLPGEREGKI WMWHRCLKCP  1620
RTNGFPPATR RVVMSDAAWG LSFGKFLELS FSNHAAANRV ATCGHSLHRD CLRFYGFGRM  1680
VACFSYASIH VHSVYLPPQK LEFHNDNQEW IQKEAEEVGH RAELLFTELR NALNQILEKR  1740
PISGTADGGK KAPESSQIVE LEEMLQKERE DFEESLQKTM HKEVKFGQPA VDILEINRLR  1800
RQLLFHSYIW DQRLIQAASL SKKSFQEGLS SSLPKLKEKP ISSMEKLVDT NINSMPGKGL  1860
SSSDSSLRET KPDVSIYQGG DVGSFSQPGG EQNTNEMVQD QNHSNEAKNF TPSSDNSIDE  1920
SDPLESGTSV RRTLSEGNES PVVANLSDTL DAAWTGESHP TSTIPKENDY SLPDSTLVNS  1980
ATVLRKVESN SDLQNCAVDQ AGVKATAPTH SLSSKSLKVF DKNYSFNSQK IIIGEYNPVN  2040
VSMFRELERQ SGARLLLPIG VNDSVIPVFD DEPTSVIAYA LVSSDYHLQI SESERPRDAL  2100
DSSVSLPLFD SANLLSLSSF DESLSETYRN LGSSDEGMLS LSRSRSSQAL DSLLSKDIHA  2160
RVSFTDGGPL GKVKYTVTCY YATRFEALRR TCCPSERDFV RSLSRCKKWG AQGGKSNVFF  2220
AKTLDDRFII KQVTKTELES FIKFAPSYFK YLSESISTRS PTCLAKVLGI YQVSSKHGKA  2280
GKESKMDVLV MENLLFRRNV TRLYDLKGSS RSRYNPDTSG SNKVLLDQNL IEAMPTSPIF  2340
VGNKAKRVLE RAVWNDTAFL ASIDVMDYSL LVGVDEEKDE LVLGIIDFMR QYTWDKHLET  2400
WVKTSGILGG AKNTSPTVIS PQQYKKRFRK AMTTYFLMVP DQWSPLTIVP SGSQSDVGEE  2460
NAQDPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	1e-40	bHLH family protein