PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP028138.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 499aa MW: 54261.6 Da PI: 7.7334 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.4 | 1.6e-10 | 134 | 158 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G++CkF H+ PCP028138.1 134 GEKDCAHYMLTRTCKFGESCKFDHP 158 7889********************8 PP | |||||||
2 | zf-CCCH | 26.4 | 1.2e-08 | 188 | 211 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++f +t Ck+G rCkF+H++ PCP028138.1 188 PDCPYFIKTQRCKFGMRCKFNHPK 211 78********************96 PP | |||||||
3 | zf-CCCH | 36.8 | 6.4e-12 | 234 | 258 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G +CkF+H++ PCP028138.1 234 EPPCAFYLKTGQCKFGVTCKFHHPK 258 79*********************96 PP | |||||||
4 | zf-CCCH | 38.4 | 2e-12 | 308 | 333 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ PCP028138.1 308 PGEPDCPFYLKTGSCKYGATCRYNHP 333 5789*********************9 PP | |||||||
5 | zf-CCCH | 37.4 | 4.4e-12 | 391 | 413 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+++++tG+Ck+G+ CkF+H+ PCP028138.1 391 IECDYYMKTGECKFGELCKFHHP 413 68********************8 PP | |||||||
6 | zf-CCCH | 40.5 | 4.5e-13 | 446 | 471 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C ++++tGtCkyG++CkF H+p PCP028138.1 446 GVAICVYYLKTGTCKYGASCKFDHPP 471 5789********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence |
MSSHLYGFGA AAQSATSAAT AAALSSVYSS RALTDSYLSD PALRYYSGSD PFADHHTRAT 60 SMYLPPHLIP HSAWPAPDVE PGVPGVKRPS EALYHQSYMG AYNTIGQEAW YAALAKRPRY 120 EGASTLPIYP QRPGEKDCAH YMLTRTCKFG ESCKFDHPIW VPEGGIPDWK EVPLVAPTEV 180 LPERTGAPDC PYFIKTQRCK FGMRCKFNHP KDKVIASDAS ENADVFTLPE RPSEPPCAFY 240 LKTGQCKFGV TCKFHHPKDI QIPSANQENK AGETDTAIKT EGTGFSVKAP ISFTPALLYN 300 TKELPVRPGE PDCPFYLKTG SCKYGATCRY NHPDRYAINP PIAAISHPIV ATQAAGLNIG 360 VIDPAASIYQ TLAQPTVGVG PTVYPQRFGQ IECDYYMKTG ECKFGELCKF HHPIDRSVVA 420 LSTPKAVPVQ EANVKLTLAG LPRREGVAIC VYYLKTGTCK YGASCKFDHP PPGEVMGMGA 480 TQGTSGGEAK AGEFPQEQQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | C3H family protein |