PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PCP028032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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Family | GATA | ||||||||
Protein Properties | Length: 472aa MW: 51236.4 Da PI: 5.5441 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.5 | 6.8e-17 | 185 | 219 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kTp+WR gp g+ktLCnaCG++y++ +l PCP028032.1 185 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 219 99*****************************9885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence |
MELPEFHHGG YFNGGAAKLL PGDKPTGGDF TVEDLLDFSN EDPFVTTAAD GGGFHDPAAD 60 SSAVTAVDSC NSSVSGGEPH FSGNRSFDDS QFSGDLCVPY DDLAELEWLS NFVEDSFSAD 120 MDLQSLQFLS VSNTTKPQTP ETCSSSETPQ NAPLFPSETP LPGKAEASAH APPPGTGSDS 180 SGRKCLHCAA EKTPQWRTGP MGPKTLCNAC GVRYKSGRLV PEYRPAASPT FVSARHSNSH 240 RKVLELRRQK DVQRSHHHHH QFLSPDGTGR DGTEWDGTGR DMTEWNGAGA KMPSDGNKEE 300 EDGDGEVIIL CSTDVERVVR KFTQNSSRRT ARSTRFRRTK RGTERLVPLC SVPSHVPNAY 360 PQQIEKIANA FASVGASVDD SELIFITLNG IPFEYESFVD AIQFRLSSTT IDELYGLFLS 420 KEIQLTNKKH YSSSFPLQAF NLSTGLLPTP THNNKAFAAQ NGSNLTSNQG HG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 1e-54 | GATA family protein |