PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP028007.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 458aa    MW: 51694.5 Da    PI: 5.9556
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP028007.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS432.82.6e-132444531374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL++cA +v+sg+ e+a+  L +  +laspdgd+mqR+aayfteALa r+++  ++l kal++++ s  ++see+ +++lf++++P+lk++++++
  PCP028007.1  44 LIQLLYACASHVASGSIENANIWLDQTCQLASPDGDSMQRIAAYFTEALADRMLKGLPGLHKALNSTKIS--SVSEEILVQRLFFDLCPFLKVAYVVT 139
                  689*************************************************************999998..6************************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  N+aI+ea+ege++vHiiD+   +++QW++L+q+L++Rpegpp+lRiTg+++    +ke l ++  rL++ Ae+l++pf+fn+ ++++le+l++e+Lrv
  PCP028007.1 140 NRAIVEAMEGEKMVHIIDLHSCEPAQWINLIQTLNARPEGPPHLRITGIHE----QKEVLDQMFLRLTEEAENLNIPFQFNA-IVSKLENLDIESLRV 232
                  ***************************************************....9**************************.7999*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll............................................desvsles.erdevLklvkslsPkvvvvveqeadhn 249
                  k+gEalaV+++lqlh+ll                                             +++s++s +  ++L  +++lsPk++v++eqea+hn
  PCP028007.1 233 KTGEALAVCSILQLHSLLasdddqrrktpiasknlqkvlhmnkltlgewlekdpingspdsaLSPLSSASpKMGSFLTSLWGLSPKLMVITEQEANHN 330
                  ***********************************************************9984444444446778*********************** PP

         GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                  ++++++r++eal++y alfd+le++++r   er+kvE+ l+g+ei+n++aceg+er+erhe+lekW  rle aGF+ vpls++ + qa  llr ++  
  PCP028007.1 331 GHTLMDRIMEALYFYGALFDCLESTVSRSPMERQKVEKLLFGEEIKNIIACEGTERTERHEKLEKWILRLELAGFGRVPLSYNGMLQATELLRGYD-- 426
                  ***********************************************************************************************9.. PP

         GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                  gy+++e +g++v++W+drpL+s+S Wr
  PCP028007.1 427 GYKIKEYNGCVVICWHDRPLFSISGWR 453
                  **************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    
MAQEDGSPVT SSALQFFPWL SPGIGSPYSP WLRELKSEER GLCLIQLLYA CASHVASGSI  60
ENANIWLDQT CQLASPDGDS MQRIAAYFTE ALADRMLKGL PGLHKALNST KISSVSEEIL  120
VQRLFFDLCP FLKVAYVVTN RAIVEAMEGE KMVHIIDLHS CEPAQWINLI QTLNARPEGP  180
PHLRITGIHE QKEVLDQMFL RLTEEAENLN IPFQFNAIVS KLENLDIESL RVKTGEALAV  240
CSILQLHSLL ASDDDQRRKT PIASKNLQKV LHMNKLTLGE WLEKDPINGS PDSALSPLSS  300
ASPKMGSFLT SLWGLSPKLM VITEQEANHN GHTLMDRIME ALYFYGALFD CLESTVSRSP  360
MERQKVEKLL FGEEIKNIIA CEGTERTERH EKLEKWILRL ELAGFGRVPL SYNGMLQATE  420
LLRGYDGYKI KEYNGCVVIC WHDRPLFSIS GWRFRRYQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein