PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027959.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 311aa MW: 34666.8 Da PI: 7.7897

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027959.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5.1e-19	145	199	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k PCP027959.1 145 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 199 677889***********************************************98 PP
2	HD-ZIP_I/II	129.5	1.3e-41	145	234	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l PCP027959.1 145 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 234 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MMVEREDLGL SLSLNFPQTH NNHSNSSSSG FRLNLMPSLL PTSASSTSGF LPQKPLWNDP 60 LPSSDLNSNS ETYRAVPRSF LRGIDVNRPP STGDCEDEAG VSSPNSTVSS VSGKRSERDA 120 NGEDLDLERD GSRGISDEED GEACRKKLRL SKDQSAILEE SFKEHNTLNP KQKLALAKQL 180 GLRPRQVEVW FQNRRARTKL KQTEVDCEFL KRCCENLTEE NRRLQKEVQE LRALKLSPQF 240 YMQMTPPTTL TMCPSCERVG VPPNSSSSAA DPRSHLQMGP VQPRPGPINP WASATTIPHR 300 PLPFDAFHAR S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	202	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	1e-102	HD-ZIP family protein