PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027897.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CAMTA

Protein Properties

Length: 897aa MW: 101269 Da PI: 7.6889

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027897.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	162.7	6.7e-51	3	117	3	117
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 + k+rwl+++ei+aiL n++ +++ ++ + pksg+++L++rk +r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ ptf rrcyw PCP027897.1 3 EAKSRWLRPNEIHAILYNYKYFTVYIKPVNMPKSGTIVLFDRKLLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERVHVYYAHGEDSPTFVRRCYW 100 459********************************************************************************************* PP CG-1 101 lLeeelekivlvhylev 117 lL+++le+ivlvhy+e+ PCP027897.1 101 LLDKSLEHIVLVHYRET 117 *************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 897 aa Download sequence
MEEAKSRWLR PNEIHAILYN YKYFTVYIKP VNMPKSGTIV LFDRKLLRNF RKDGHNWKKK 60 KDGKTVKEAH EHLKVGNEER VHVYYAHGED SPTFVRRCYW LLDKSLEHIV LVHYRETREG 120 SAVTPVNSNS SSVSDPSAPS FLSEEHDSVA NNAYCAGENE LQELGDGLTV NNHEQRLHDI 180 NTLEWDELLV KNDFKGDNIS GYDQRNQVVG NGSISGGASS LSAEISSFGN LTNPTAGSEN 240 IQFNLSGTPC VETLLGDVNS NVQRRDYIAK ATCGSVDVLH NNGLHSQDSF GRWINQIMTE 300 STASVEDPVL DSSFSAAQNS FASPTMDHLQ SSVPQPIFNI TDISPTWAFS NEKTKILITG 360 FLHQEFFQLA KSNLLCVCGD VCLPAEIVQA GVYRCFVPPH SPRVVNLFMS IDGHKPISQE 420 LNFEYRAPVL SDTLVSSEGN KWEEFQAQMR LAYLLFSSSH SLNIISSKVP PNALKEAKKF 480 AHRTSHISNN WPYLMKAVED NKTPLPLAKD SLFELILKNR LKDWLLEKVV QVSKTKEYDA 540 HGQGVIHLCA ILEYTWAVRL FSWSGLSLDF RDRRGWTALH WAAYCGREKM VALLLSAGAK 600 PNLVTDPTPD NPGGSTAADF AFMKGHDGLA AYLSEKALVE QFNAMSVAGN VSGSLEISSN 660 YAANSEYLSE EDLYLKDTLA AYRTTADAAA RIQAAFRENS LKQKTKAVQY SIPEAEARGI 720 IAALKIQHAF RNYETKKKIQ AAARIQYRFR TWKMRQDFLS LRRQTIKIQV NPLPSSLFLA 780 AFRGFQVRRQ YRKVLWSVGV LEKAVLRWRF KRRGLRGLNV APAEVSVDQD PESDTEEDFY 840 RASQKQAEER VERSVIRVQA MFRSKKAQEE YARMKMAHNQ ATLEFDDFLD PDAIMDN

Sequence ? help Back to Top

Protein Sequence Length: 897 aa Download sequence

MEEAKSRWLR PNEIHAILYN YKYFTVYIKP VNMPKSGTIV LFDRKLLRNF RKDGHNWKKK  60
KDGKTVKEAH EHLKVGNEER VHVYYAHGED SPTFVRRCYW LLDKSLEHIV LVHYRETREG  120
SAVTPVNSNS SSVSDPSAPS FLSEEHDSVA NNAYCAGENE LQELGDGLTV NNHEQRLHDI  180
NTLEWDELLV KNDFKGDNIS GYDQRNQVVG NGSISGGASS LSAEISSFGN LTNPTAGSEN  240
IQFNLSGTPC VETLLGDVNS NVQRRDYIAK ATCGSVDVLH NNGLHSQDSF GRWINQIMTE  300
STASVEDPVL DSSFSAAQNS FASPTMDHLQ SSVPQPIFNI TDISPTWAFS NEKTKILITG  360
FLHQEFFQLA KSNLLCVCGD VCLPAEIVQA GVYRCFVPPH SPRVVNLFMS IDGHKPISQE  420
LNFEYRAPVL SDTLVSSEGN KWEEFQAQMR LAYLLFSSSH SLNIISSKVP PNALKEAKKF  480
AHRTSHISNN WPYLMKAVED NKTPLPLAKD SLFELILKNR LKDWLLEKVV QVSKTKEYDA  540
HGQGVIHLCA ILEYTWAVRL FSWSGLSLDF RDRRGWTALH WAAYCGREKM VALLLSAGAK  600
PNLVTDPTPD NPGGSTAADF AFMKGHDGLA AYLSEKALVE QFNAMSVAGN VSGSLEISSN  660
YAANSEYLSE EDLYLKDTLA AYRTTADAAA RIQAAFRENS LKQKTKAVQY SIPEAEARGI  720
IAALKIQHAF RNYETKKKIQ AAARIQYRFR TWKMRQDFLS LRRQTIKIQV NPLPSSLFLA  780
AFRGFQVRRQ YRKVLWSVGV LEKAVLRWRF KRRGLRGLNV APAEVSVDQD PESDTEEDFY  840
RASQKQAEER VERSVIRVQA MFRSKKAQEE YARMKMAHNQ ATLEFDDFLD PDAIMDN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	44	60	RKLLRNFRKDGHNWKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	CAMTA family protein