PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP027707.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 490aa MW: 53511.1 Da PI: 6.7986

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP027707.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg+sF++ ++ +H ++ PCP027707.1 133 FECPICGQSFRSEDEVSVHVDSC 155 89*****************8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MDDMKDKFKG FMKTTFSSSS SAKFKGQGRV LGSSSSSGTA DSVLTRPKQT PQSNPKPLPI 60 SNSNSSVASP NPRPSPQKAL ILDQKKAQIP DQSKAEPSSN SKPDRKTDSG FDPFDSLITP 120 GKRSQNGFTL NVFECPICGQ SFRSEDEVSV HVDSCVNAPV EHKSVEGVGV SGLPDNGSES 180 SRSDLEACIG TFASGNPAAG SVEVVLRLLR NIVKEPENVK FRRIRMSNAK IREAIGEVVG 240 GIELLEFVGF ELKEEDGEMW ALMEVPKEEQ ISLMKKAIAL LEPPKVQEVD PLPSIASLNV 300 DEPVEPKKVD RQTRVFFSVS ESMAARIEVP ASFYNLTATE LKREAEMRKK KIEDSQLLIP 360 KSFKEKQAKA AKRRYRKTVI RIQFPDGVVL QGVFSPLEPT SSLYEYVSSA LKEPSLEFEL 420 LNPVAIKRRV IPHFPAAGEK AATLADEDLM PSALVKFKPI ETDSVVFTGL CNQLLEISEP 480 LTSGSAVAPV

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MDDMKDKFKG FMKTTFSSSS SAKFKGQGRV LGSSSSSGTA DSVLTRPKQT PQSNPKPLPI  60
SNSNSSVASP NPRPSPQKAL ILDQKKAQIP DQSKAEPSSN SKPDRKTDSG FDPFDSLITP  120
GKRSQNGFTL NVFECPICGQ SFRSEDEVSV HVDSCVNAPV EHKSVEGVGV SGLPDNGSES  180
SRSDLEACIG TFASGNPAAG SVEVVLRLLR NIVKEPENVK FRRIRMSNAK IREAIGEVVG  240
GIELLEFVGF ELKEEDGEMW ALMEVPKEEQ ISLMKKAIAL LEPPKVQEVD PLPSIASLNV  300
DEPVEPKKVD RQTRVFFSVS ESMAARIEVP ASFYNLTATE LKREAEMRKK KIEDSQLLIP  360
KSFKEKQAKA AKRRYRKTVI RIQFPDGVVL QGVFSPLEPT SSLYEYVSSA LKEPSLEFEL  420
LNPVAIKRRV IPHFPAAGEK AATLADEDLM PSALVKFKPI ETDSVVFTGL CNQLLEISEP  480
LTSGSAVAPV